TCIA connection

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TCIA connection

Felix
Hi all,

I am trying to download a collection from the TCIA archive using slicer. I
have successfully installed the TCIA browser module and added it the key for
my TCIA account.

I can browse the database but I can neither load images on the scene nor add
to my dicom database .

If I try to browse the database again, after trying to download something, I
get this error:

Traceback (most recent call last):
  File
"C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/TCIABrowser/lib/Slicer-4.6/qt-scripted-modules/TCIABrowser.py",
line 682, in studiesTableSelectionChanged
    if self.studyInstanceUIDs[n].isSelected():
ValueError: Trying to call 'isSelected' on a destroyed QTableWidgetItem
object

This is the full log:

[DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Session start time .......:
2017-01-11 20:06:46
[DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Slicer version ...........:
4.6.2 (revision 25516) win-amd64 - installed
[DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Operating system .........:
Windows / 7 / Service Pack 1 (Build 7601) - 64-bit
[DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Memory ...................:
6066 MB physical, 12131 MB virtual
[DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - CPU ......................:
GenuineIntel , 2 cores, 16 logical processors
[DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Developer mode enabled ...:
no
[DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Prefer executable CLI ....:
no
[DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Additional module paths ..:
C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/DeveloperToolsForExtensions/lib/Slicer-4.6/qt-scripted-modules,
C:\programas\Slicer_4_6_2\XNATSlicer-master\XNATSlicer,
C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/VolumeClip/lib/Slicer-4.6/qt-scripted-modules,
C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/TCIABrowser/lib/Slicer-4.6/qt-scripted-modules
[DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Number of registered
modules: 136
[DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Number of instantiated
modules: 136
[INFO][Stream] 11.01.2017 20:06:47 [] (unknown:0) - Initializing terminology
mapping for map file
C:/programas/Slicer_4_6_2/share/Slicer-4.6/ColorFiles/Terminology//GenericAnatomyColors-SNOMED.csv
[INFO][Stream] 11.01.2017 20:06:47 [] (unknown:0) - 288 terms were read for
Slicer LUT GenericAnatomyColors
[DEBUG][Qt] 11.01.2017 20:06:47 [] (unknown:0) - Number of loaded modules:
136
[DEBUG][Qt] 11.01.2017 20:06:47 [] (unknown:0) - Switch to module:
"Welcome"
[WARNING][Qt] 11.01.2017 20:07:11 [] (unknown:0) - libpng warning: iCCP:
known incorrect sRGB profile
[WARNING][Qt] 11.01.2017 20:07:11 [] (unknown:0) - libpng warning: iCCP:
known incorrect sRGB profile
[DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) - Switch to module:
"TCIABrowser"
[DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
ctkDICOMModelPrivate::generateQuery: query is: SELECT UID as UID,
PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date,
PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
[DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
ctkDICOMModelPrivate::updateQueries for Root: query is: SELECT UID as UID,
PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date,
PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
[WARNING][Qt] 11.01.2017 20:07:14 [] (unknown:0) - QSqlQuery::exec: database
not open
[DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
ctkDICOMModelPrivate::generateQuery: query is: SELECT UID as UID,
PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date,
PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
[DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
ctkDICOMModelPrivate::updateQueries for Root: query is: SELECT UID as UID,
PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date,
PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
[DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
ctkDICOMModelPrivate::generateQuery: query is: SELECT StudyInstanceUID as
UID, StudyDescription as Name, ModalitiesInStudy as Scan, StudyDate as Date,
AccessionNumber as Number, InstitutionName as Institution,
ReferringPhysician as Referrer, PerformingPhysiciansName as Performer FROM
Studies WHERE PatientsUID='30' ORDER BY "Name" DESC
[DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
ctkDICOMModelPrivate::updateQueries for Patient: query is: SELECT
StudyInstanceUID as UID, StudyDescription as Name, ModalitiesInStudy as
Scan, StudyDate as Date, AccessionNumber as Number, InstitutionName as
Institution, ReferringPhysician as Referrer, PerformingPhysiciansName as
Performer FROM Studies WHERE PatientsUID='30' ORDER BY "Name" DESC
[DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
ctkDICOMModelPrivate::generateQuery: query is: SELECT StudyInstanceUID as
UID, StudyDescription as Name, ModalitiesInStudy as Scan, StudyDate as Date,
AccessionNumber as Number, InstitutionName as Institution,
ReferringPhysician as Referrer, PerformingPhysiciansName as Performer FROM
Studies WHERE PatientsUID='31' ORDER BY "Name" DESC
[DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
ctkDICOMModelPrivate::updateQueries for Patient: query is: SELECT
StudyInstanceUID as UID, StudyDescription as Name, ModalitiesInStudy as
Scan, StudyDate as Date, AccessionNumber as Number, InstitutionName as
Institution, ReferringPhysician as Referrer, PerformingPhysiciansName as
Performer FROM Studies WHERE PatientsUID='31' ORDER BY "Name" DESC
[CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) - Traceback (most
recent call last):
[CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -   File
"C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/TCIABrowser/lib/Slicer-4.6/qt-scripted-modules/TCIABrowser.py",
line 755, in onLoadButton
[CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -    
self.addSelectedToDownloadQueue()
[CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -   File
"C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/TCIABrowser/lib/Slicer-4.6/qt-scripted-modules/TCIABrowser.py",
line 814, in addSelectedToDownloadQueue
[CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -     loadables =
plugin.examine([fileList])
[CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -   File
"C:\programas\Slicer_4_6_2\lib\Slicer-4.6\qt-scripted-modules\DICOMLib\DICOMPlugin.py",
line 119, in examine
[CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -     return
self.examineForImport(fileList)
[CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -   File
"C:/programas/Slicer_4_6_2/lib/Slicer-4.6/qt-scripted-modules/DICOMScalarVolumePlugin.py",
line 52, in examineForImport
[CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -    
loadablesForFiles = self.examineFiles(files)
[CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -   File
"C:/programas/Slicer_4_6_2/lib/Slicer-4.6/qt-scripted-modules/DICOMScalarVolumePlugin.py",
line 67, in examineFiles
[CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -     seriesUID =
slicer.dicomDatabase.fileValue(files[0],self.tags['seriesUID'])
[CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) - IndexError: tuple
index out of range

Does any one of you know where the problem is and how to solve it?

Thanks in advance.

Félix.



--
View this message in context: http://slicer-users.65878.n3.nabble.com/TCIA-connection-tp4031549.html
Sent from the slicer-users mailing list archive at Nabble.com.
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Re: TCIA connection

Andrey Fedorov-2
Felix, we will look into this and get back to you. Sorry for the trouble.

On Wed, Jan 11, 2017 at 2:31 PM, Felix <[hidden email]> wrote:

> Hi all,
>
> I am trying to download a collection from the TCIA archive using slicer. I
> have successfully installed the TCIA browser module and added it the key for
> my TCIA account.
>
> I can browse the database but I can neither load images on the scene nor add
> to my dicom database .
>
> If I try to browse the database again, after trying to download something, I
> get this error:
>
> Traceback (most recent call last):
>   File
> "C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/TCIABrowser/lib/Slicer-4.6/qt-scripted-modules/TCIABrowser.py",
> line 682, in studiesTableSelectionChanged
>     if self.studyInstanceUIDs[n].isSelected():
> ValueError: Trying to call 'isSelected' on a destroyed QTableWidgetItem
> object
>
> This is the full log:
>
> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Session start time .......:
> 2017-01-11 20:06:46
> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Slicer version ...........:
> 4.6.2 (revision 25516) win-amd64 - installed
> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Operating system .........:
> Windows / 7 / Service Pack 1 (Build 7601) - 64-bit
> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Memory ...................:
> 6066 MB physical, 12131 MB virtual
> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - CPU ......................:
> GenuineIntel , 2 cores, 16 logical processors
> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Developer mode enabled ...:
> no
> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Prefer executable CLI ....:
> no
> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Additional module paths ..:
> C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/DeveloperToolsForExtensions/lib/Slicer-4.6/qt-scripted-modules,
> C:\programas\Slicer_4_6_2\XNATSlicer-master\XNATSlicer,
> C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/VolumeClip/lib/Slicer-4.6/qt-scripted-modules,
> C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/TCIABrowser/lib/Slicer-4.6/qt-scripted-modules
> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Number of registered
> modules: 136
> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Number of instantiated
> modules: 136
> [INFO][Stream] 11.01.2017 20:06:47 [] (unknown:0) - Initializing terminology
> mapping for map file
> C:/programas/Slicer_4_6_2/share/Slicer-4.6/ColorFiles/Terminology//GenericAnatomyColors-SNOMED.csv
> [INFO][Stream] 11.01.2017 20:06:47 [] (unknown:0) - 288 terms were read for
> Slicer LUT GenericAnatomyColors
> [DEBUG][Qt] 11.01.2017 20:06:47 [] (unknown:0) - Number of loaded modules:
> 136
> [DEBUG][Qt] 11.01.2017 20:06:47 [] (unknown:0) - Switch to module:
> "Welcome"
> [WARNING][Qt] 11.01.2017 20:07:11 [] (unknown:0) - libpng warning: iCCP:
> known incorrect sRGB profile
> [WARNING][Qt] 11.01.2017 20:07:11 [] (unknown:0) - libpng warning: iCCP:
> known incorrect sRGB profile
> [DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) - Switch to module:
> "TCIABrowser"
> [DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
> ctkDICOMModelPrivate::generateQuery: query is: SELECT UID as UID,
> PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date,
> PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
> [DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
> ctkDICOMModelPrivate::updateQueries for Root: query is: SELECT UID as UID,
> PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date,
> PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
> [WARNING][Qt] 11.01.2017 20:07:14 [] (unknown:0) - QSqlQuery::exec: database
> not open
> [DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
> ctkDICOMModelPrivate::generateQuery: query is: SELECT UID as UID,
> PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date,
> PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
> [DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
> ctkDICOMModelPrivate::updateQueries for Root: query is: SELECT UID as UID,
> PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date,
> PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
> [DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
> ctkDICOMModelPrivate::generateQuery: query is: SELECT StudyInstanceUID as
> UID, StudyDescription as Name, ModalitiesInStudy as Scan, StudyDate as Date,
> AccessionNumber as Number, InstitutionName as Institution,
> ReferringPhysician as Referrer, PerformingPhysiciansName as Performer FROM
> Studies WHERE PatientsUID='30' ORDER BY "Name" DESC
> [DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
> ctkDICOMModelPrivate::updateQueries for Patient: query is: SELECT
> StudyInstanceUID as UID, StudyDescription as Name, ModalitiesInStudy as
> Scan, StudyDate as Date, AccessionNumber as Number, InstitutionName as
> Institution, ReferringPhysician as Referrer, PerformingPhysiciansName as
> Performer FROM Studies WHERE PatientsUID='30' ORDER BY "Name" DESC
> [DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
> ctkDICOMModelPrivate::generateQuery: query is: SELECT StudyInstanceUID as
> UID, StudyDescription as Name, ModalitiesInStudy as Scan, StudyDate as Date,
> AccessionNumber as Number, InstitutionName as Institution,
> ReferringPhysician as Referrer, PerformingPhysiciansName as Performer FROM
> Studies WHERE PatientsUID='31' ORDER BY "Name" DESC
> [DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
> ctkDICOMModelPrivate::updateQueries for Patient: query is: SELECT
> StudyInstanceUID as UID, StudyDescription as Name, ModalitiesInStudy as
> Scan, StudyDate as Date, AccessionNumber as Number, InstitutionName as
> Institution, ReferringPhysician as Referrer, PerformingPhysiciansName as
> Performer FROM Studies WHERE PatientsUID='31' ORDER BY "Name" DESC
> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) - Traceback (most
> recent call last):
> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -   File
> "C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/TCIABrowser/lib/Slicer-4.6/qt-scripted-modules/TCIABrowser.py",
> line 755, in onLoadButton
> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -
> self.addSelectedToDownloadQueue()
> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -   File
> "C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/TCIABrowser/lib/Slicer-4.6/qt-scripted-modules/TCIABrowser.py",
> line 814, in addSelectedToDownloadQueue
> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -     loadables =
> plugin.examine([fileList])
> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -   File
> "C:\programas\Slicer_4_6_2\lib\Slicer-4.6\qt-scripted-modules\DICOMLib\DICOMPlugin.py",
> line 119, in examine
> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -     return
> self.examineForImport(fileList)
> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -   File
> "C:/programas/Slicer_4_6_2/lib/Slicer-4.6/qt-scripted-modules/DICOMScalarVolumePlugin.py",
> line 52, in examineForImport
> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -
> loadablesForFiles = self.examineFiles(files)
> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -   File
> "C:/programas/Slicer_4_6_2/lib/Slicer-4.6/qt-scripted-modules/DICOMScalarVolumePlugin.py",
> line 67, in examineFiles
> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -     seriesUID =
> slicer.dicomDatabase.fileValue(files[0],self.tags['seriesUID'])
> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) - IndexError: tuple
> index out of range
>
> Does any one of you know where the problem is and how to solve it?
>
> Thanks in advance.
>
> Félix.
>
>
>
> --
> View this message in context: http://slicer-users.65878.n3.nabble.com/TCIA-connection-tp4031549.html
> Sent from the slicer-users mailing list archive at Nabble.com.
> _______________________________________________
> slicer-users mailing list
> [hidden email]
> http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
> To unsubscribe: send email to [hidden email] with unsubscribe as the subject
> http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/FAQ
_______________________________________________
slicer-users mailing list
[hidden email]
http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
To unsubscribe: send email to [hidden email] with unsubscribe as the subject
http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/FAQ
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Re: TCIA connection

Andrey Fedorov-2
Félix, I created a separate issue on github to follow up on this:
https://github.com/QIICR/TCIABrowser/issues/38

On Wed, Jan 11, 2017 at 6:07 PM, Andrey Fedorov
<[hidden email]> wrote:

> Felix, we will look into this and get back to you. Sorry for the trouble.
>
> On Wed, Jan 11, 2017 at 2:31 PM, Felix <[hidden email]> wrote:
>> Hi all,
>>
>> I am trying to download a collection from the TCIA archive using slicer. I
>> have successfully installed the TCIA browser module and added it the key for
>> my TCIA account.
>>
>> I can browse the database but I can neither load images on the scene nor add
>> to my dicom database .
>>
>> If I try to browse the database again, after trying to download something, I
>> get this error:
>>
>> Traceback (most recent call last):
>>   File
>> "C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/TCIABrowser/lib/Slicer-4.6/qt-scripted-modules/TCIABrowser.py",
>> line 682, in studiesTableSelectionChanged
>>     if self.studyInstanceUIDs[n].isSelected():
>> ValueError: Trying to call 'isSelected' on a destroyed QTableWidgetItem
>> object
>>
>> This is the full log:
>>
>> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Session start time .......:
>> 2017-01-11 20:06:46
>> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Slicer version ...........:
>> 4.6.2 (revision 25516) win-amd64 - installed
>> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Operating system .........:
>> Windows / 7 / Service Pack 1 (Build 7601) - 64-bit
>> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Memory ...................:
>> 6066 MB physical, 12131 MB virtual
>> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - CPU ......................:
>> GenuineIntel , 2 cores, 16 logical processors
>> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Developer mode enabled ...:
>> no
>> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Prefer executable CLI ....:
>> no
>> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Additional module paths ..:
>> C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/DeveloperToolsForExtensions/lib/Slicer-4.6/qt-scripted-modules,
>> C:\programas\Slicer_4_6_2\XNATSlicer-master\XNATSlicer,
>> C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/VolumeClip/lib/Slicer-4.6/qt-scripted-modules,
>> C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/TCIABrowser/lib/Slicer-4.6/qt-scripted-modules
>> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Number of registered
>> modules: 136
>> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Number of instantiated
>> modules: 136
>> [INFO][Stream] 11.01.2017 20:06:47 [] (unknown:0) - Initializing terminology
>> mapping for map file
>> C:/programas/Slicer_4_6_2/share/Slicer-4.6/ColorFiles/Terminology//GenericAnatomyColors-SNOMED.csv
>> [INFO][Stream] 11.01.2017 20:06:47 [] (unknown:0) - 288 terms were read for
>> Slicer LUT GenericAnatomyColors
>> [DEBUG][Qt] 11.01.2017 20:06:47 [] (unknown:0) - Number of loaded modules:
>> 136
>> [DEBUG][Qt] 11.01.2017 20:06:47 [] (unknown:0) - Switch to module:
>> "Welcome"
>> [WARNING][Qt] 11.01.2017 20:07:11 [] (unknown:0) - libpng warning: iCCP:
>> known incorrect sRGB profile
>> [WARNING][Qt] 11.01.2017 20:07:11 [] (unknown:0) - libpng warning: iCCP:
>> known incorrect sRGB profile
>> [DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) - Switch to module:
>> "TCIABrowser"
>> [DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
>> ctkDICOMModelPrivate::generateQuery: query is: SELECT UID as UID,
>> PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date,
>> PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
>> [DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
>> ctkDICOMModelPrivate::updateQueries for Root: query is: SELECT UID as UID,
>> PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date,
>> PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
>> [WARNING][Qt] 11.01.2017 20:07:14 [] (unknown:0) - QSqlQuery::exec: database
>> not open
>> [DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
>> ctkDICOMModelPrivate::generateQuery: query is: SELECT UID as UID,
>> PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date,
>> PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
>> [DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
>> ctkDICOMModelPrivate::updateQueries for Root: query is: SELECT UID as UID,
>> PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date,
>> PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
>> [DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
>> ctkDICOMModelPrivate::generateQuery: query is: SELECT StudyInstanceUID as
>> UID, StudyDescription as Name, ModalitiesInStudy as Scan, StudyDate as Date,
>> AccessionNumber as Number, InstitutionName as Institution,
>> ReferringPhysician as Referrer, PerformingPhysiciansName as Performer FROM
>> Studies WHERE PatientsUID='30' ORDER BY "Name" DESC
>> [DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
>> ctkDICOMModelPrivate::updateQueries for Patient: query is: SELECT
>> StudyInstanceUID as UID, StudyDescription as Name, ModalitiesInStudy as
>> Scan, StudyDate as Date, AccessionNumber as Number, InstitutionName as
>> Institution, ReferringPhysician as Referrer, PerformingPhysiciansName as
>> Performer FROM Studies WHERE PatientsUID='30' ORDER BY "Name" DESC
>> [DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
>> ctkDICOMModelPrivate::generateQuery: query is: SELECT StudyInstanceUID as
>> UID, StudyDescription as Name, ModalitiesInStudy as Scan, StudyDate as Date,
>> AccessionNumber as Number, InstitutionName as Institution,
>> ReferringPhysician as Referrer, PerformingPhysiciansName as Performer FROM
>> Studies WHERE PatientsUID='31' ORDER BY "Name" DESC
>> [DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
>> ctkDICOMModelPrivate::updateQueries for Patient: query is: SELECT
>> StudyInstanceUID as UID, StudyDescription as Name, ModalitiesInStudy as
>> Scan, StudyDate as Date, AccessionNumber as Number, InstitutionName as
>> Institution, ReferringPhysician as Referrer, PerformingPhysiciansName as
>> Performer FROM Studies WHERE PatientsUID='31' ORDER BY "Name" DESC
>> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) - Traceback (most
>> recent call last):
>> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -   File
>> "C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/TCIABrowser/lib/Slicer-4.6/qt-scripted-modules/TCIABrowser.py",
>> line 755, in onLoadButton
>> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -
>> self.addSelectedToDownloadQueue()
>> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -   File
>> "C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/TCIABrowser/lib/Slicer-4.6/qt-scripted-modules/TCIABrowser.py",
>> line 814, in addSelectedToDownloadQueue
>> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -     loadables =
>> plugin.examine([fileList])
>> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -   File
>> "C:\programas\Slicer_4_6_2\lib\Slicer-4.6\qt-scripted-modules\DICOMLib\DICOMPlugin.py",
>> line 119, in examine
>> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -     return
>> self.examineForImport(fileList)
>> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -   File
>> "C:/programas/Slicer_4_6_2/lib/Slicer-4.6/qt-scripted-modules/DICOMScalarVolumePlugin.py",
>> line 52, in examineForImport
>> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -
>> loadablesForFiles = self.examineFiles(files)
>> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -   File
>> "C:/programas/Slicer_4_6_2/lib/Slicer-4.6/qt-scripted-modules/DICOMScalarVolumePlugin.py",
>> line 67, in examineFiles
>> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -     seriesUID =
>> slicer.dicomDatabase.fileValue(files[0],self.tags['seriesUID'])
>> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) - IndexError: tuple
>> index out of range
>>
>> Does any one of you know where the problem is and how to solve it?
>>
>> Thanks in advance.
>>
>> Félix.
>>
>>
>>
>> --
>> View this message in context: http://slicer-users.65878.n3.nabble.com/TCIA-connection-tp4031549.html
>> Sent from the slicer-users mailing list archive at Nabble.com.
>> _______________________________________________
>> slicer-users mailing list
>> [hidden email]
>> http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
>> To unsubscribe: send email to [hidden email] with unsubscribe as the subject
>> http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/FAQ
> _______________________________________________
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Re: TCIA connection

Andrey Fedorov-2
Felix,

can you provide more details? I cannot reproduce this issue with the
latest nightly of Slicer.

Does it happen all the time, or for a specific collection/dataset?

AF



On Thu, Jan 12, 2017 at 2:45 PM, Andrey Fedorov
<[hidden email]> wrote:

> Félix, I created a separate issue on github to follow up on this:
> https://github.com/QIICR/TCIABrowser/issues/38
>
> On Wed, Jan 11, 2017 at 6:07 PM, Andrey Fedorov
> <[hidden email]> wrote:
>> Felix, we will look into this and get back to you. Sorry for the trouble.
>>
>> On Wed, Jan 11, 2017 at 2:31 PM, Felix <[hidden email]> wrote:
>>> Hi all,
>>>
>>> I am trying to download a collection from the TCIA archive using slicer. I
>>> have successfully installed the TCIA browser module and added it the key for
>>> my TCIA account.
>>>
>>> I can browse the database but I can neither load images on the scene nor add
>>> to my dicom database .
>>>
>>> If I try to browse the database again, after trying to download something, I
>>> get this error:
>>>
>>> Traceback (most recent call last):
>>>   File
>>> "C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/TCIABrowser/lib/Slicer-4.6/qt-scripted-modules/TCIABrowser.py",
>>> line 682, in studiesTableSelectionChanged
>>>     if self.studyInstanceUIDs[n].isSelected():
>>> ValueError: Trying to call 'isSelected' on a destroyed QTableWidgetItem
>>> object
>>>
>>> This is the full log:
>>>
>>> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Session start time .......:
>>> 2017-01-11 20:06:46
>>> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Slicer version ...........:
>>> 4.6.2 (revision 25516) win-amd64 - installed
>>> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Operating system .........:
>>> Windows / 7 / Service Pack 1 (Build 7601) - 64-bit
>>> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Memory ...................:
>>> 6066 MB physical, 12131 MB virtual
>>> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - CPU ......................:
>>> GenuineIntel , 2 cores, 16 logical processors
>>> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Developer mode enabled ...:
>>> no
>>> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Prefer executable CLI ....:
>>> no
>>> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Additional module paths ..:
>>> C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/DeveloperToolsForExtensions/lib/Slicer-4.6/qt-scripted-modules,
>>> C:\programas\Slicer_4_6_2\XNATSlicer-master\XNATSlicer,
>>> C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/VolumeClip/lib/Slicer-4.6/qt-scripted-modules,
>>> C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/TCIABrowser/lib/Slicer-4.6/qt-scripted-modules
>>> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Number of registered
>>> modules: 136
>>> [DEBUG][Qt] 11.01.2017 20:06:46 [] (unknown:0) - Number of instantiated
>>> modules: 136
>>> [INFO][Stream] 11.01.2017 20:06:47 [] (unknown:0) - Initializing terminology
>>> mapping for map file
>>> C:/programas/Slicer_4_6_2/share/Slicer-4.6/ColorFiles/Terminology//GenericAnatomyColors-SNOMED.csv
>>> [INFO][Stream] 11.01.2017 20:06:47 [] (unknown:0) - 288 terms were read for
>>> Slicer LUT GenericAnatomyColors
>>> [DEBUG][Qt] 11.01.2017 20:06:47 [] (unknown:0) - Number of loaded modules:
>>> 136
>>> [DEBUG][Qt] 11.01.2017 20:06:47 [] (unknown:0) - Switch to module:
>>> "Welcome"
>>> [WARNING][Qt] 11.01.2017 20:07:11 [] (unknown:0) - libpng warning: iCCP:
>>> known incorrect sRGB profile
>>> [WARNING][Qt] 11.01.2017 20:07:11 [] (unknown:0) - libpng warning: iCCP:
>>> known incorrect sRGB profile
>>> [DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) - Switch to module:
>>> "TCIABrowser"
>>> [DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
>>> ctkDICOMModelPrivate::generateQuery: query is: SELECT UID as UID,
>>> PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date,
>>> PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
>>> [DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
>>> ctkDICOMModelPrivate::updateQueries for Root: query is: SELECT UID as UID,
>>> PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date,
>>> PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
>>> [WARNING][Qt] 11.01.2017 20:07:14 [] (unknown:0) - QSqlQuery::exec: database
>>> not open
>>> [DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
>>> ctkDICOMModelPrivate::generateQuery: query is: SELECT UID as UID,
>>> PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date,
>>> PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
>>> [DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
>>> ctkDICOMModelPrivate::updateQueries for Root: query is: SELECT UID as UID,
>>> PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date,
>>> PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
>>> [DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
>>> ctkDICOMModelPrivate::generateQuery: query is: SELECT StudyInstanceUID as
>>> UID, StudyDescription as Name, ModalitiesInStudy as Scan, StudyDate as Date,
>>> AccessionNumber as Number, InstitutionName as Institution,
>>> ReferringPhysician as Referrer, PerformingPhysiciansName as Performer FROM
>>> Studies WHERE PatientsUID='30' ORDER BY "Name" DESC
>>> [DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
>>> ctkDICOMModelPrivate::updateQueries for Patient: query is: SELECT
>>> StudyInstanceUID as UID, StudyDescription as Name, ModalitiesInStudy as
>>> Scan, StudyDate as Date, AccessionNumber as Number, InstitutionName as
>>> Institution, ReferringPhysician as Referrer, PerformingPhysiciansName as
>>> Performer FROM Studies WHERE PatientsUID='30' ORDER BY "Name" DESC
>>> [DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
>>> ctkDICOMModelPrivate::generateQuery: query is: SELECT StudyInstanceUID as
>>> UID, StudyDescription as Name, ModalitiesInStudy as Scan, StudyDate as Date,
>>> AccessionNumber as Number, InstitutionName as Institution,
>>> ReferringPhysician as Referrer, PerformingPhysiciansName as Performer FROM
>>> Studies WHERE PatientsUID='31' ORDER BY "Name" DESC
>>> [DEBUG][Qt] 11.01.2017 20:07:14 [] (unknown:0) -
>>> ctkDICOMModelPrivate::updateQueries for Patient: query is: SELECT
>>> StudyInstanceUID as UID, StudyDescription as Name, ModalitiesInStudy as
>>> Scan, StudyDate as Date, AccessionNumber as Number, InstitutionName as
>>> Institution, ReferringPhysician as Referrer, PerformingPhysiciansName as
>>> Performer FROM Studies WHERE PatientsUID='31' ORDER BY "Name" DESC
>>> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) - Traceback (most
>>> recent call last):
>>> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -   File
>>> "C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/TCIABrowser/lib/Slicer-4.6/qt-scripted-modules/TCIABrowser.py",
>>> line 755, in onLoadButton
>>> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -
>>> self.addSelectedToDownloadQueue()
>>> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -   File
>>> "C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/TCIABrowser/lib/Slicer-4.6/qt-scripted-modules/TCIABrowser.py",
>>> line 814, in addSelectedToDownloadQueue
>>> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -     loadables =
>>> plugin.examine([fileList])
>>> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -   File
>>> "C:\programas\Slicer_4_6_2\lib\Slicer-4.6\qt-scripted-modules\DICOMLib\DICOMPlugin.py",
>>> line 119, in examine
>>> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -     return
>>> self.examineForImport(fileList)
>>> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -   File
>>> "C:/programas/Slicer_4_6_2/lib/Slicer-4.6/qt-scripted-modules/DICOMScalarVolumePlugin.py",
>>> line 52, in examineForImport
>>> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -
>>> loadablesForFiles = self.examineFiles(files)
>>> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -   File
>>> "C:/programas/Slicer_4_6_2/lib/Slicer-4.6/qt-scripted-modules/DICOMScalarVolumePlugin.py",
>>> line 67, in examineFiles
>>> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) -     seriesUID =
>>> slicer.dicomDatabase.fileValue(files[0],self.tags['seriesUID'])
>>> [CRITICAL][Stream] 11.01.2017 20:07:40 [] (unknown:0) - IndexError: tuple
>>> index out of range
>>>
>>> Does any one of you know where the problem is and how to solve it?
>>>
>>> Thanks in advance.
>>>
>>> Félix.
>>>
>>>
>>>
>>> --
>>> View this message in context: http://slicer-users.65878.n3.nabble.com/TCIA-connection-tp4031549.html
>>> Sent from the slicer-users mailing list archive at Nabble.com.
>>> _______________________________________________
>>> slicer-users mailing list
>>> [hidden email]
>>> http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
>>> To unsubscribe: send email to [hidden email] with unsubscribe as the subject
>>> http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/FAQ
>> _______________________________________________
>> slicer-users mailing list
>> [hidden email]
>> http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
>> To unsubscribe: send email to [hidden email] with unsubscribe as the subject
>> http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/FAQ
> _______________________________________________
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> http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
> To unsubscribe: send email to [hidden email] with unsubscribe as the subject
> http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/FAQ
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Fwd: TCIA connection

Felix
In reply to this post by Andrey Fedorov-2

I've re installed on slicer 4.6.2. Please take into account that the length of total seems to have limit in Windows.

This is the last update: 

  • I've tried to load on scene from IvyGAP. It seems to download images but nothing is loaded (remember that I have a valid key) --> Log 1.
  • I've tried to store in my dicom database from H&N Cetuximab. Seems to download but nothing appears in my dicom database. --> Log 2.
-----------------------------------------------------------------------------------
----------------------------  LOG 1  ------------------------------------------
-----------------------------------------------------------------------------------

[DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) - Switch to module: "TCIABrowser"

[DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) - ctkDICOMModelPrivate::generateQuery: query is: SELECT UID as UID, PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date, PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC

[DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) - ctkDICOMModelPrivate::updateQueries for Root: query is: SELECT UID as UID, PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date, PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC

[WARNING][Qt] 25.01.2017 16:13:40 [] (unknown:0) - QSqlQuery::exec: database not open

[DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) - ctkDICOMModelPrivate::generateQuery: query is: SELECT UID as UID, PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date, PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC

[DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) - ctkDICOMModelPrivate::updateQueries for Root: query is: SELECT UID as UID, PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date, PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC

[DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) - ctkDICOMModelPrivate::generateQuery: query is: SELECT StudyInstanceUID as UID, StudyDescription as Name, ModalitiesInStudy as Scan, StudyDate as Date, AccessionNumber as Number, InstitutionName as Institution, ReferringPhysician as Referrer, PerformingPhysiciansName as Performer FROM Studies WHERE PatientsUID='33' ORDER BY "Name" DESC

[DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) - ctkDICOMModelPrivate::updateQueries for Patient: query is: SELECT StudyInstanceUID as UID, StudyDescription as Name, ModalitiesInStudy as Scan, StudyDate as Date, AccessionNumber as Number, InstitutionName as Institution, ReferringPhysician as Referrer, PerformingPhysiciansName as Performer FROM Studies WHERE PatientsUID='33' ORDER BY "Name" DESC

[DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) - ctkDICOMModelPrivate::generateQuery: query is: SELECT StudyInstanceUID as UID, StudyDescription as Name, ModalitiesInStudy as Scan, StudyDate as Date, AccessionNumber as Number, InstitutionName as Institution, ReferringPhysician as Referrer, PerformingPhysiciansName as Performer FROM Studies WHERE PatientsUID='30' ORDER BY "Name" DESC

[DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) - ctkDICOMModelPrivate::updateQueries for Patient: query is: SELECT StudyInstanceUID as UID, StudyDescription as Name, ModalitiesInStudy as Scan, StudyDate as Date, AccessionNumber as Number, InstitutionName as Institution, ReferringPhysician as Referrer, PerformingPhysiciansName as Performer FROM Studies WHERE PatientsUID='30' ORDER BY "Name" DESC

[DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) - ctkDICOMModelPrivate::generateQuery: query is: SELECT StudyInstanceUID as UID, StudyDescription as Name, ModalitiesInStudy as Scan, StudyDate as Date, AccessionNumber as Number, InstitutionName as Institution, ReferringPhysician as Referrer, PerformingPhysiciansName as Performer FROM Studies WHERE PatientsUID='31' ORDER BY "Name" DESC

[DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) - ctkDICOMModelPrivate::updateQueries for Patient: query is: SELECT StudyInstanceUID as UID, StudyDescription as Name, ModalitiesInStudy as Scan, StudyDate as Date, AccessionNumber as Number, InstitutionName as Institution, ReferringPhysician as Referrer, PerformingPhysiciansName as Performer FROM Studies WHERE PatientsUID='31' ORDER BY "Name" DESC

[WARNING][Qt] 25.01.2017 16:14:30 [] (unknown:0) - QSqlDatabasePrivate::addDatabase: duplicate connection name 'DICOM-DB', old connection removed.

[WARNING][Qt] 25.01.2017 16:14:30 [] (unknown:0) - QSqlDatabasePrivate::addDatabase: duplicate connection name 'DICOM-DBTagCache', old connection removed.

[CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - Traceback (most recent call last):

[CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - File "C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/TCIABrowser/lib/Slicer-4.6/qt-scripted-modules/TCIABrowser.py", line 755, in onLoadButton

[CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - self.addSelectedToDownloadQueue()

[CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - File "C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/TCIABrowser/lib/Slicer-4.6/qt-scripted-modules/TCIABrowser.py", line 814, in addSelectedToDownloadQueue

[CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - loadables = plugin.examine([fileList])

[CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - File "C:\programas\Slicer_4_6_2\lib\Slicer-4.6\qt-scripted-modules\DICOMLib\DICOMPlugin.py", line 119, in examine

[CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - return self.examineForImport(fileList)

[CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - File "C:/programas/Slicer_4_6_2/lib/Slicer-4.6/qt-scripted-modules/DICOMScalarVolumePlugin.py", line 52, in examineForImport

[CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - loadablesForFiles = self.examineFiles(files)

[CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - File "C:/programas/Slicer_4_6_2/lib/Slicer-4.6/qt-scripted-modules/DICOMScalarVolumePlugin.py", line 67, in examineFiles

[CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - seriesUID = slicer.dicomDatabase.fileValue(files[0],self.tags['seriesUID'])

[CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - IndexError: tuple index out of range

[DEBUG][Qt] 25.01.2017 16:14:32 [] (unknown:0) - Could not load "C:/programas/Slicer_4_6_2/XNATSlicer-master/XNATSlicer/Cache/downloads/data/experiments/xnat_E00074/scans/900/resources/1029/files/1.2.840.113564.99.1.71094327807604.8172.20169512715523.17674.2-900-1-9g8t6v.dcm"

DCMTK says: No such file or directory



-----------------------------------------------------------------------------------
----------------------------  LOG 2  ------------------------------------------
-----------------------------------------------------------------------------------

[DEBUG][Qt] 25.01.2017 16:21:55 [] (unknown:0) - Switch to module: "TCIABrowser"

[DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Processing C:/Users/rayox010/Documents/SlicerDICOMDatabase/TCIALocal/7/images/1-091.dcm

[WARNING][Qt] 25.01.2017 16:22:42 [] (unknown:0) - QSqlQuery::value: not positioned on a valid record

[WARNING][Qt] 25.01.2017 16:22:42 [] (unknown:0) - QSqlQuery::value: not positioned on a valid record

[DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - inserting filePath: "C:/Users/rayox010/Documents/SlicerDICOMDatabase/TCIALocal/7/images/1-091.dcm"

[DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - database filename for "1.3.6.1.4.1.14519.5.2.1.5099.8010.771104110219016637590309730419" is empty - we should insert on top of it

[DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - This looks like a different patient from last insert: "0522c0001"

[DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - New patient inserted: 34

[DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - New patient inserted as : 34

[DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Going to insert this instance with dbPatientID: 34

[DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Need to insert new study: "1.3.6.1.4.1.14519.5.2.1.5099.8010.256809878238026661650178294515"

[DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Study Added

[WARNING][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Statement: SELECT * FROM Series WHERE SeriesInstanceUID = ?

[DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Need to insert new series: "1.3.6.1.4.1.14519.5.2.1.5099.8010.293653169363509354643731389289"

[DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Series Added

[DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Maybe add Instance

[DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Instance Added

[DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Processing C:/Users/rayox010/Documents/SlicerDICOMDatabase/TCIALocal/7/images/10-100.dcm

[WARNING][Qt] 25.01.2017 16:22:42 [] (unknown:0) - QSqlQuery::value: not positioned on a valid record

[WARNING][Qt] 25.01.2017 16:22:42 [] (unknown:0) - QSqlQuery::value: not positioned on a valid record

[DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - inserting filePath: "C:/Users/rayox010/Documents/SlicerDICOMDatabase/TCIALocal/7/images/10-100.dcm"

[DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - database filename for "1.3.6.1.4.1.14519.5.2.1.5099.8010.328644539230316634309847048059" is empty - we should insert on top of it

[DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Going to insert this instance with dbPatientID: 34

[DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Maybe add Instance

[DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Instance Added

......

[DEBUG][Qt] 25.01.2017 16:22:50 [] (unknown:0) - Processing C:/Users/rayox010/Documents/SlicerDICOMDatabase/TCIALocal/7/images/99-189.dcm

[WARNING][Qt] 25.01.2017 16:22:50 [] (unknown:0) - QSqlQuery::value: not positioned on a valid record

[WARNING][Qt] 25.01.2017 16:22:50 [] (unknown:0) - QSqlQuery::value: not positioned on a valid record

[DEBUG][Qt] 25.01.2017 16:22:50 [] (unknown:0) - inserting filePath: "C:/Users/rayox010/Documents/SlicerDICOMDatabase/TCIALocal/7/images/99-189.dcm"

[DEBUG][Qt] 25.01.2017 16:22:50 [] (unknown:0) - database filename for "1.3.6.1.4.1.14519.5.2.1.5099.8010.317776145748140537057822982020" is empty - we should insert on top of it

[DEBUG][Qt] 25.01.2017 16:22:50 [] (unknown:0) - Going to insert this instance with dbPatientID: 34

[DEBUG][Qt] 25.01.2017 16:22:50 [] (unknown:0) - Maybe add Instance

[DEBUG][Qt] 25.01.2017 16:22:50 [] (unknown:0) - Instance Added



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Re: Fwd: TCIA connection

Andrey Fedorov-2
Thank you for this detail - I can reproduce the problem with the
IvyGap collection.

On Wed, Jan 25, 2017 at 10:37 AM, Félix Navarro Guirado
<[hidden email]> wrote:

>
> I've re installed on slicer 4.6.2. Please take into account that the length
> of total seems to have limit in Windows.
>
> This is the last update:
>
> I've tried to load on scene from IvyGAP. It seems to download images but
> nothing is loaded (remember that I have a valid key) --> Log 1.
> I've tried to store in my dicom database from H&N Cetuximab. Seems to
> download but nothing appears in my dicom database. --> Log 2.
>
> -----------------------------------------------------------------------------------
> ----------------------------  LOG 1
> ------------------------------------------
> -----------------------------------------------------------------------------------
>
> [DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) - Switch to module:
> "TCIABrowser"
>
> [DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) -
> ctkDICOMModelPrivate::generateQuery: query is: SELECT UID as UID,
> PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date,
> PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
>
> [DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) -
> ctkDICOMModelPrivate::updateQueries for Root: query is: SELECT UID as UID,
> PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date,
> PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
>
> [WARNING][Qt] 25.01.2017 16:13:40 [] (unknown:0) - QSqlQuery::exec: database
> not open
>
> [DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) -
> ctkDICOMModelPrivate::generateQuery: query is: SELECT UID as UID,
> PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date,
> PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
>
> [DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) -
> ctkDICOMModelPrivate::updateQueries for Root: query is: SELECT UID as UID,
> PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date,
> PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
>
> [DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) -
> ctkDICOMModelPrivate::generateQuery: query is: SELECT StudyInstanceUID as
> UID, StudyDescription as Name, ModalitiesInStudy as Scan, StudyDate as Date,
> AccessionNumber as Number, InstitutionName as Institution,
> ReferringPhysician as Referrer, PerformingPhysiciansName as Performer FROM
> Studies WHERE PatientsUID='33' ORDER BY "Name" DESC
>
> [DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) -
> ctkDICOMModelPrivate::updateQueries for Patient: query is: SELECT
> StudyInstanceUID as UID, StudyDescription as Name, ModalitiesInStudy as
> Scan, StudyDate as Date, AccessionNumber as Number, InstitutionName as
> Institution, ReferringPhysician as Referrer, PerformingPhysiciansName as
> Performer FROM Studies WHERE PatientsUID='33' ORDER BY "Name" DESC
>
> [DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) -
> ctkDICOMModelPrivate::generateQuery: query is: SELECT StudyInstanceUID as
> UID, StudyDescription as Name, ModalitiesInStudy as Scan, StudyDate as Date,
> AccessionNumber as Number, InstitutionName as Institution,
> ReferringPhysician as Referrer, PerformingPhysiciansName as Performer FROM
> Studies WHERE PatientsUID='30' ORDER BY "Name" DESC
>
> [DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) -
> ctkDICOMModelPrivate::updateQueries for Patient: query is: SELECT
> StudyInstanceUID as UID, StudyDescription as Name, ModalitiesInStudy as
> Scan, StudyDate as Date, AccessionNumber as Number, InstitutionName as
> Institution, ReferringPhysician as Referrer, PerformingPhysiciansName as
> Performer FROM Studies WHERE PatientsUID='30' ORDER BY "Name" DESC
>
> [DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) -
> ctkDICOMModelPrivate::generateQuery: query is: SELECT StudyInstanceUID as
> UID, StudyDescription as Name, ModalitiesInStudy as Scan, StudyDate as Date,
> AccessionNumber as Number, InstitutionName as Institution,
> ReferringPhysician as Referrer, PerformingPhysiciansName as Performer FROM
> Studies WHERE PatientsUID='31' ORDER BY "Name" DESC
>
> [DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) -
> ctkDICOMModelPrivate::updateQueries for Patient: query is: SELECT
> StudyInstanceUID as UID, StudyDescription as Name, ModalitiesInStudy as
> Scan, StudyDate as Date, AccessionNumber as Number, InstitutionName as
> Institution, ReferringPhysician as Referrer, PerformingPhysiciansName as
> Performer FROM Studies WHERE PatientsUID='31' ORDER BY "Name" DESC
>
> [WARNING][Qt] 25.01.2017 16:14:30 [] (unknown:0) -
> QSqlDatabasePrivate::addDatabase: duplicate connection name 'DICOM-DB', old
> connection removed.
>
> [WARNING][Qt] 25.01.2017 16:14:30 [] (unknown:0) -
> QSqlDatabasePrivate::addDatabase: duplicate connection name
> 'DICOM-DBTagCache', old connection removed.
>
> [CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - Traceback (most
> recent call last):
>
> [CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - File
> "C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/TCIABrowser/lib/Slicer-4.6/qt-scripted-modules/TCIABrowser.py",
> line 755, in onLoadButton
>
> [CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) -
> self.addSelectedToDownloadQueue()
>
> [CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - File
> "C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/TCIABrowser/lib/Slicer-4.6/qt-scripted-modules/TCIABrowser.py",
> line 814, in addSelectedToDownloadQueue
>
> [CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - loadables =
> plugin.examine([fileList])
>
> [CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - File
> "C:\programas\Slicer_4_6_2\lib\Slicer-4.6\qt-scripted-modules\DICOMLib\DICOMPlugin.py",
> line 119, in examine
>
> [CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - return
> self.examineForImport(fileList)
>
> [CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - File
> "C:/programas/Slicer_4_6_2/lib/Slicer-4.6/qt-scripted-modules/DICOMScalarVolumePlugin.py",
> line 52, in examineForImport
>
> [CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - loadablesForFiles =
> self.examineFiles(files)
>
> [CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - File
> "C:/programas/Slicer_4_6_2/lib/Slicer-4.6/qt-scripted-modules/DICOMScalarVolumePlugin.py",
> line 67, in examineFiles
>
> [CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - seriesUID =
> slicer.dicomDatabase.fileValue(files[0],self.tags['seriesUID'])
>
> [CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - IndexError: tuple
> index out of range
>
> [DEBUG][Qt] 25.01.2017 16:14:32 [] (unknown:0) - Could not load
> "C:/programas/Slicer_4_6_2/XNATSlicer-master/XNATSlicer/Cache/downloads/data/experiments/xnat_E00074/scans/900/resources/1029/files/1.2.840.113564.99.1.71094327807604.8172.20169512715523.17674.2-900-1-9g8t6v.dcm"
>
> DCMTK says: No such file or directory
>
>
>
> -----------------------------------------------------------------------------------
> ----------------------------  LOG 2
> ------------------------------------------
> -----------------------------------------------------------------------------------
>
> [DEBUG][Qt] 25.01.2017 16:21:55 [] (unknown:0) - Switch to module:
> "TCIABrowser"
>
> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Processing
> C:/Users/rayox010/Documents/SlicerDICOMDatabase/TCIALocal/7/images/1-091.dcm
>
> [WARNING][Qt] 25.01.2017 16:22:42 [] (unknown:0) - QSqlQuery::value: not
> positioned on a valid record
>
> [WARNING][Qt] 25.01.2017 16:22:42 [] (unknown:0) - QSqlQuery::value: not
> positioned on a valid record
>
> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - inserting filePath:
> "C:/Users/rayox010/Documents/SlicerDICOMDatabase/TCIALocal/7/images/1-091.dcm"
>
> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - database filename for
> "1.3.6.1.4.1.14519.5.2.1.5099.8010.771104110219016637590309730419" is empty
> - we should insert on top of it
>
> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - This looks like a different
> patient from last insert: "0522c0001"
>
> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - New patient inserted: 34
>
> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - New patient inserted as :
> 34
>
> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Going to insert this
> instance with dbPatientID: 34
>
> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Need to insert new study:
> "1.3.6.1.4.1.14519.5.2.1.5099.8010.256809878238026661650178294515"
>
> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Study Added
>
> [WARNING][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Statement: SELECT * FROM
> Series WHERE SeriesInstanceUID = ?
>
> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Need to insert new series:
> "1.3.6.1.4.1.14519.5.2.1.5099.8010.293653169363509354643731389289"
>
> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Series Added
>
> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Maybe add Instance
>
> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Instance Added
>
> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Processing
> C:/Users/rayox010/Documents/SlicerDICOMDatabase/TCIALocal/7/images/10-100.dcm
>
> [WARNING][Qt] 25.01.2017 16:22:42 [] (unknown:0) - QSqlQuery::value: not
> positioned on a valid record
>
> [WARNING][Qt] 25.01.2017 16:22:42 [] (unknown:0) - QSqlQuery::value: not
> positioned on a valid record
>
> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - inserting filePath:
> "C:/Users/rayox010/Documents/SlicerDICOMDatabase/TCIALocal/7/images/10-100.dcm"
>
> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - database filename for
> "1.3.6.1.4.1.14519.5.2.1.5099.8010.328644539230316634309847048059" is empty
> - we should insert on top of it
>
> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Going to insert this
> instance with dbPatientID: 34
>
> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Maybe add Instance
>
> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Instance Added
>
> ......
>
> [DEBUG][Qt] 25.01.2017 16:22:50 [] (unknown:0) - Processing
> C:/Users/rayox010/Documents/SlicerDICOMDatabase/TCIALocal/7/images/99-189.dcm
>
> [WARNING][Qt] 25.01.2017 16:22:50 [] (unknown:0) - QSqlQuery::value: not
> positioned on a valid record
>
> [WARNING][Qt] 25.01.2017 16:22:50 [] (unknown:0) - QSqlQuery::value: not
> positioned on a valid record
>
> [DEBUG][Qt] 25.01.2017 16:22:50 [] (unknown:0) - inserting filePath:
> "C:/Users/rayox010/Documents/SlicerDICOMDatabase/TCIALocal/7/images/99-189.dcm"
>
> [DEBUG][Qt] 25.01.2017 16:22:50 [] (unknown:0) - database filename for
> "1.3.6.1.4.1.14519.5.2.1.5099.8010.317776145748140537057822982020" is empty
> - we should insert on top of it
>
> [DEBUG][Qt] 25.01.2017 16:22:50 [] (unknown:0) - Going to insert this
> instance with dbPatientID: 34
>
> [DEBUG][Qt] 25.01.2017 16:22:50 [] (unknown:0) - Maybe add Instance
>
> [DEBUG][Qt] 25.01.2017 16:22:50 [] (unknown:0) - Instance Added
>
>
>
> _______________________________________________
> slicer-users mailing list
> [hidden email]
> http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
> To unsubscribe: send email to [hidden email] with
> unsubscribe as the subject
> http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/FAQ
_______________________________________________
slicer-users mailing list
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http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
To unsubscribe: send email to [hidden email] with unsubscribe as the subject
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Re: Fwd: TCIA connection

Andrey Fedorov-2
For the IvyGAP collection, the issue appears to be with TCIA. It
returns empty image archive. I reported the problem to TCIA helpdesk.

For the Q&N Cetuximab, I am unable to reproduce the problem. Can you
try restarting Slicer and see whether the downloaded series shows up
in the database after restart? Sometime there are issues with
displaying data imported from the module. If this is not the case,
please provide more details to reproduce the problem
(subject/study/series).

Any particular reason you are using 4.6.2 and not the nightly version of Slicer?

On Wed, Jan 25, 2017 at 11:13 AM, Andrey Fedorov
<[hidden email]> wrote:

> Thank you for this detail - I can reproduce the problem with the
> IvyGap collection.
>
> On Wed, Jan 25, 2017 at 10:37 AM, Félix Navarro Guirado
> <[hidden email]> wrote:
>>
>> I've re installed on slicer 4.6.2. Please take into account that the length
>> of total seems to have limit in Windows.
>>
>> This is the last update:
>>
>> I've tried to load on scene from IvyGAP. It seems to download images but
>> nothing is loaded (remember that I have a valid key) --> Log 1.
>> I've tried to store in my dicom database from H&N Cetuximab. Seems to
>> download but nothing appears in my dicom database. --> Log 2.
>>
>> -----------------------------------------------------------------------------------
>> ----------------------------  LOG 1
>> ------------------------------------------
>> -----------------------------------------------------------------------------------
>>
>> [DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) - Switch to module:
>> "TCIABrowser"
>>
>> [DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) -
>> ctkDICOMModelPrivate::generateQuery: query is: SELECT UID as UID,
>> PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date,
>> PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
>>
>> [DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) -
>> ctkDICOMModelPrivate::updateQueries for Root: query is: SELECT UID as UID,
>> PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date,
>> PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
>>
>> [WARNING][Qt] 25.01.2017 16:13:40 [] (unknown:0) - QSqlQuery::exec: database
>> not open
>>
>> [DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) -
>> ctkDICOMModelPrivate::generateQuery: query is: SELECT UID as UID,
>> PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date,
>> PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
>>
>> [DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) -
>> ctkDICOMModelPrivate::updateQueries for Root: query is: SELECT UID as UID,
>> PatientsName as Name, PatientsAge as Age, PatientsBirthDate as Date,
>> PatientID as "Subject ID" FROM Patients ORDER BY "Name" DESC
>>
>> [DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) -
>> ctkDICOMModelPrivate::generateQuery: query is: SELECT StudyInstanceUID as
>> UID, StudyDescription as Name, ModalitiesInStudy as Scan, StudyDate as Date,
>> AccessionNumber as Number, InstitutionName as Institution,
>> ReferringPhysician as Referrer, PerformingPhysiciansName as Performer FROM
>> Studies WHERE PatientsUID='33' ORDER BY "Name" DESC
>>
>> [DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) -
>> ctkDICOMModelPrivate::updateQueries for Patient: query is: SELECT
>> StudyInstanceUID as UID, StudyDescription as Name, ModalitiesInStudy as
>> Scan, StudyDate as Date, AccessionNumber as Number, InstitutionName as
>> Institution, ReferringPhysician as Referrer, PerformingPhysiciansName as
>> Performer FROM Studies WHERE PatientsUID='33' ORDER BY "Name" DESC
>>
>> [DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) -
>> ctkDICOMModelPrivate::generateQuery: query is: SELECT StudyInstanceUID as
>> UID, StudyDescription as Name, ModalitiesInStudy as Scan, StudyDate as Date,
>> AccessionNumber as Number, InstitutionName as Institution,
>> ReferringPhysician as Referrer, PerformingPhysiciansName as Performer FROM
>> Studies WHERE PatientsUID='30' ORDER BY "Name" DESC
>>
>> [DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) -
>> ctkDICOMModelPrivate::updateQueries for Patient: query is: SELECT
>> StudyInstanceUID as UID, StudyDescription as Name, ModalitiesInStudy as
>> Scan, StudyDate as Date, AccessionNumber as Number, InstitutionName as
>> Institution, ReferringPhysician as Referrer, PerformingPhysiciansName as
>> Performer FROM Studies WHERE PatientsUID='30' ORDER BY "Name" DESC
>>
>> [DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) -
>> ctkDICOMModelPrivate::generateQuery: query is: SELECT StudyInstanceUID as
>> UID, StudyDescription as Name, ModalitiesInStudy as Scan, StudyDate as Date,
>> AccessionNumber as Number, InstitutionName as Institution,
>> ReferringPhysician as Referrer, PerformingPhysiciansName as Performer FROM
>> Studies WHERE PatientsUID='31' ORDER BY "Name" DESC
>>
>> [DEBUG][Qt] 25.01.2017 16:13:40 [] (unknown:0) -
>> ctkDICOMModelPrivate::updateQueries for Patient: query is: SELECT
>> StudyInstanceUID as UID, StudyDescription as Name, ModalitiesInStudy as
>> Scan, StudyDate as Date, AccessionNumber as Number, InstitutionName as
>> Institution, ReferringPhysician as Referrer, PerformingPhysiciansName as
>> Performer FROM Studies WHERE PatientsUID='31' ORDER BY "Name" DESC
>>
>> [WARNING][Qt] 25.01.2017 16:14:30 [] (unknown:0) -
>> QSqlDatabasePrivate::addDatabase: duplicate connection name 'DICOM-DB', old
>> connection removed.
>>
>> [WARNING][Qt] 25.01.2017 16:14:30 [] (unknown:0) -
>> QSqlDatabasePrivate::addDatabase: duplicate connection name
>> 'DICOM-DBTagCache', old connection removed.
>>
>> [CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - Traceback (most
>> recent call last):
>>
>> [CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - File
>> "C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/TCIABrowser/lib/Slicer-4.6/qt-scripted-modules/TCIABrowser.py",
>> line 755, in onLoadButton
>>
>> [CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) -
>> self.addSelectedToDownloadQueue()
>>
>> [CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - File
>> "C:/Users/rayox010/AppData/Roaming/NA-MIC/Extensions-25516/TCIABrowser/lib/Slicer-4.6/qt-scripted-modules/TCIABrowser.py",
>> line 814, in addSelectedToDownloadQueue
>>
>> [CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - loadables =
>> plugin.examine([fileList])
>>
>> [CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - File
>> "C:\programas\Slicer_4_6_2\lib\Slicer-4.6\qt-scripted-modules\DICOMLib\DICOMPlugin.py",
>> line 119, in examine
>>
>> [CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - return
>> self.examineForImport(fileList)
>>
>> [CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - File
>> "C:/programas/Slicer_4_6_2/lib/Slicer-4.6/qt-scripted-modules/DICOMScalarVolumePlugin.py",
>> line 52, in examineForImport
>>
>> [CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - loadablesForFiles =
>> self.examineFiles(files)
>>
>> [CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - File
>> "C:/programas/Slicer_4_6_2/lib/Slicer-4.6/qt-scripted-modules/DICOMScalarVolumePlugin.py",
>> line 67, in examineFiles
>>
>> [CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - seriesUID =
>> slicer.dicomDatabase.fileValue(files[0],self.tags['seriesUID'])
>>
>> [CRITICAL][Stream] 25.01.2017 16:14:31 [] (unknown:0) - IndexError: tuple
>> index out of range
>>
>> [DEBUG][Qt] 25.01.2017 16:14:32 [] (unknown:0) - Could not load
>> "C:/programas/Slicer_4_6_2/XNATSlicer-master/XNATSlicer/Cache/downloads/data/experiments/xnat_E00074/scans/900/resources/1029/files/1.2.840.113564.99.1.71094327807604.8172.20169512715523.17674.2-900-1-9g8t6v.dcm"
>>
>> DCMTK says: No such file or directory
>>
>>
>>
>> -----------------------------------------------------------------------------------
>> ----------------------------  LOG 2
>> ------------------------------------------
>> -----------------------------------------------------------------------------------
>>
>> [DEBUG][Qt] 25.01.2017 16:21:55 [] (unknown:0) - Switch to module:
>> "TCIABrowser"
>>
>> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Processing
>> C:/Users/rayox010/Documents/SlicerDICOMDatabase/TCIALocal/7/images/1-091.dcm
>>
>> [WARNING][Qt] 25.01.2017 16:22:42 [] (unknown:0) - QSqlQuery::value: not
>> positioned on a valid record
>>
>> [WARNING][Qt] 25.01.2017 16:22:42 [] (unknown:0) - QSqlQuery::value: not
>> positioned on a valid record
>>
>> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - inserting filePath:
>> "C:/Users/rayox010/Documents/SlicerDICOMDatabase/TCIALocal/7/images/1-091.dcm"
>>
>> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - database filename for
>> "1.3.6.1.4.1.14519.5.2.1.5099.8010.771104110219016637590309730419" is empty
>> - we should insert on top of it
>>
>> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - This looks like a different
>> patient from last insert: "0522c0001"
>>
>> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - New patient inserted: 34
>>
>> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - New patient inserted as :
>> 34
>>
>> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Going to insert this
>> instance with dbPatientID: 34
>>
>> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Need to insert new study:
>> "1.3.6.1.4.1.14519.5.2.1.5099.8010.256809878238026661650178294515"
>>
>> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Study Added
>>
>> [WARNING][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Statement: SELECT * FROM
>> Series WHERE SeriesInstanceUID = ?
>>
>> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Need to insert new series:
>> "1.3.6.1.4.1.14519.5.2.1.5099.8010.293653169363509354643731389289"
>>
>> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Series Added
>>
>> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Maybe add Instance
>>
>> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Instance Added
>>
>> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Processing
>> C:/Users/rayox010/Documents/SlicerDICOMDatabase/TCIALocal/7/images/10-100.dcm
>>
>> [WARNING][Qt] 25.01.2017 16:22:42 [] (unknown:0) - QSqlQuery::value: not
>> positioned on a valid record
>>
>> [WARNING][Qt] 25.01.2017 16:22:42 [] (unknown:0) - QSqlQuery::value: not
>> positioned on a valid record
>>
>> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - inserting filePath:
>> "C:/Users/rayox010/Documents/SlicerDICOMDatabase/TCIALocal/7/images/10-100.dcm"
>>
>> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - database filename for
>> "1.3.6.1.4.1.14519.5.2.1.5099.8010.328644539230316634309847048059" is empty
>> - we should insert on top of it
>>
>> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Going to insert this
>> instance with dbPatientID: 34
>>
>> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Maybe add Instance
>>
>> [DEBUG][Qt] 25.01.2017 16:22:42 [] (unknown:0) - Instance Added
>>
>> ......
>>
>> [DEBUG][Qt] 25.01.2017 16:22:50 [] (unknown:0) - Processing
>> C:/Users/rayox010/Documents/SlicerDICOMDatabase/TCIALocal/7/images/99-189.dcm
>>
>> [WARNING][Qt] 25.01.2017 16:22:50 [] (unknown:0) - QSqlQuery::value: not
>> positioned on a valid record
>>
>> [WARNING][Qt] 25.01.2017 16:22:50 [] (unknown:0) - QSqlQuery::value: not
>> positioned on a valid record
>>
>> [DEBUG][Qt] 25.01.2017 16:22:50 [] (unknown:0) - inserting filePath:
>> "C:/Users/rayox010/Documents/SlicerDICOMDatabase/TCIALocal/7/images/99-189.dcm"
>>
>> [DEBUG][Qt] 25.01.2017 16:22:50 [] (unknown:0) - database filename for
>> "1.3.6.1.4.1.14519.5.2.1.5099.8010.317776145748140537057822982020" is empty
>> - we should insert on top of it
>>
>> [DEBUG][Qt] 25.01.2017 16:22:50 [] (unknown:0) - Going to insert this
>> instance with dbPatientID: 34
>>
>> [DEBUG][Qt] 25.01.2017 16:22:50 [] (unknown:0) - Maybe add Instance
>>
>> [DEBUG][Qt] 25.01.2017 16:22:50 [] (unknown:0) - Instance Added
>>
>>
>>
>> _______________________________________________
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Re: Fwd: TCIA connection

Felix
In reply to this post by Andrey Fedorov-2
The patient appears in the DICOM database after restarting Slicer.

No, there is no reason. I just use to work with the last stable release of all programs when I use them in the hospital.

2017-01-25 18:02 GMT+01:00 Andrey Fedorov <[hidden email]>:
For the IvyGAP collection, the issue appears to be with TCIA. It
returns empty image archive. I reported the problem to TCIA helpdesk.

For the Q&N Cetuximab, I am unable to reproduce the problem. Can you
try restarting Slicer and see whether the downloaded series shows up
in the database after restart? Sometime there are issues with
displaying data imported from the module. If this is not the case,
please provide more details to reproduce the problem
(subject/study/series).

Any particular reason you are using 4.6.2 and not the nightly version of Slicer?

> http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/FAQ


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Re: Fwd: TCIA connection

Andrey Fedorov-2
In reply to this post by Andrey Fedorov-2
On Wed, Jan 25, 2017 at 12:10 PM, Félix Navarro Guirado
<[hidden email]> wrote:
> The patient appears in the DICOM database after restarting Slicer.
>

Great, thanks. I've seen this issue sometime, but it is not reliably
reproducible...

> No, there is no reason. I just use to work with the last stable release of
> all programs when I use them in the hospital.
>

The designation of Slicer "stable" release is very misleading.
"Stable" is usually only relevant around the time it is released,
since most of the time important bugs and feature improvements are not
integrated back into the stable release. I recommend that you use
Nightly.

I've just committed updates to the code that improve logging and error
reporting, so that you have more information about what is going on
next time you have problems with the extension.

I will let you know when I hear from TCIA help desk about the IvyGAP
collection issue.


> 2017-01-25 18:02 GMT+01:00 Andrey Fedorov <[hidden email]>:
>>
>> For the IvyGAP collection, the issue appears to be with TCIA. It
>> returns empty image archive. I reported the problem to TCIA helpdesk.
>>
>> For the Q&N Cetuximab, I am unable to reproduce the problem. Can you
>> try restarting Slicer and see whether the downloaded series shows up
>> in the database after restart? Sometime there are issues with
>> displaying data imported from the module. If this is not the case,
>> please provide more details to reproduce the problem
>> (subject/study/series).
>>
>> Any particular reason you are using 4.6.2 and not the nightly version of
>> Slicer?
>>
>> > http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/FAQ
>
>
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Re: Fwd: TCIA connection

Andrey Fedorov-2
> I will let you know when I hear from TCIA help desk about the IvyGAP collection issue.

TCIA folks looked into the problem, and it seems to be resolved. I am
able to download datasets from the IvyGAP collection now.

On Wed, Jan 25, 2017 at 12:16 PM, Andrey Fedorov
<[hidden email]> wrote:

> On Wed, Jan 25, 2017 at 12:10 PM, Félix Navarro Guirado
> <[hidden email]> wrote:
>> The patient appears in the DICOM database after restarting Slicer.
>>
>
> Great, thanks. I've seen this issue sometime, but it is not reliably
> reproducible...
>
>> No, there is no reason. I just use to work with the last stable release of
>> all programs when I use them in the hospital.
>>
>
> The designation of Slicer "stable" release is very misleading.
> "Stable" is usually only relevant around the time it is released,
> since most of the time important bugs and feature improvements are not
> integrated back into the stable release. I recommend that you use
> Nightly.
>
> I've just committed updates to the code that improve logging and error
> reporting, so that you have more information about what is going on
> next time you have problems with the extension.
>
> I will let you know when I hear from TCIA help desk about the IvyGAP
> collection issue.
>
>
>> 2017-01-25 18:02 GMT+01:00 Andrey Fedorov <[hidden email]>:
>>>
>>> For the IvyGAP collection, the issue appears to be with TCIA. It
>>> returns empty image archive. I reported the problem to TCIA helpdesk.
>>>
>>> For the Q&N Cetuximab, I am unable to reproduce the problem. Can you
>>> try restarting Slicer and see whether the downloaded series shows up
>>> in the database after restart? Sometime there are issues with
>>> displaying data imported from the module. If this is not the case,
>>> please provide more details to reproduce the problem
>>> (subject/study/series).
>>>
>>> Any particular reason you are using 4.6.2 and not the nightly version of
>>> Slicer?
>>>
>>> > http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/FAQ
>>
>>
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Re: Fwd: TCIA connection

Felix
In reply to this post by Andrey Fedorov-2
After the modification on the TCIA server Ivy GAP collection works for me.



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Re: Fwd: TCIA connection

Felix
This post has NOT been accepted by the mailing list yet.
In reply to this post by Andrey Fedorov-2
After the modification on the TCIA server Ivy GAP collection works for me.