error

classic Classic list List threaded Threaded
9 messages Options
Reply | Threaded
Open this post in threaded view
|

error

Matt A
Hello, I'm installing slicer-3-6, and when trying to compile (using "./Slicer-3-6/Scripts/getbuildtest.tcl ") I get an error.

This is the error:

-- Configuring incomplete, errors occurred!

child process exited abnormally
1
    while executing
"error $ret"
    (procedure "runcmd" line 23)
    invoked from within
"runcmd $::CMAKE  -G$GENERATOR  -DCMAKE_BUILD_TYPE:STRING=$::VTK_BUILD_TYPE  -DBUILD_SHARED_LIBS:BOOL=ON  -DCMAKE_SKIP_RPATH:BOOL=ON  -DCMAKE_CXX_COMPI..."
    invoked from within
"if { [BuildThis $::VTK_TEST_FILE "vtk"] == 1 } {
    cd $Slicer3_LIB

    runcmd $::SVN co $::VTK_TAG VTK

    # Andy's temporary hack to get around w..."
    (file "./Scripts/genlib.tcl" line 907)

child process exited abnormally
ERROR: failed to run getbuildtest: sh ./Scripts/genlib.tcl /home/            /Slicer3compiled/Slicer-3-6/../Slicer3-lib -32 --test-type Experimental

I'm not sure what to do, please help

Thanks

_______________________________________________
slicer-users mailing list
[hidden email]
http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
To unsubscribe: send email to [hidden email] with unsubscribe as the subject
Reply | Threaded
Open this post in threaded view
|

Re: error

pieper
Administrator
Hi -

It looks like a problem checking out vtk - probably the true error
message is higher in the output than what you reported here.  Try
creating an error log, as described here:

> http://www.slicer.org/slicerWiki/index.php/Slicer3:Build_Instructions#Errors_from_getbuildtest

You might try checking out vtk by hand to see if there's an issue
running svn on your system.

Best,
Steve



On 02/24/2011 10:42 AM, Matt A wrote:

> Hello, I'm installing slicer-3-6, and when trying to compile (using
> "./Slicer-3-6/Scripts/getbuildtest.tcl ") I get an error.
>
> This is the error:
>
> -- Configuring incomplete, errors occurred!
>
> child process exited abnormally
> 1
> while executing
> "error $ret"
> (procedure "runcmd" line 23)
> invoked from within
> "runcmd $::CMAKE -G$GENERATOR
> -DCMAKE_BUILD_TYPE:STRING=$::VTK_BUILD_TYPE -DBUILD_SHARED_LIBS:BOOL=ON
> -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_CXX_COMPI..."
> invoked from within
> "if { [BuildThis $::VTK_TEST_FILE "vtk"] == 1 } {
> cd $Slicer3_LIB
>
> runcmd $::SVN co $::VTK_TAG VTK
>
> # Andy's temporary hack to get around w..."
> (file "./Scripts/genlib.tcl" line 907)
>
> child process exited abnormally
> ERROR: failed to run getbuildtest: sh ./Scripts/genlib.tcl /home/
> /Slicer3compiled/Slicer-3-6/../Slicer3-lib -32 --test-type Experimental
>
> I'm not sure what to do, please help
>
> Thanks
>
>
>
> _______________________________________________
> slicer-users mailing list
> [hidden email]
> http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
> To unsubscribe: send email to [hidden email] with unsubscribe as the subject
_______________________________________________
slicer-users mailing list
[hidden email]
http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
To unsubscribe: send email to [hidden email] with unsubscribe as the subject
Reply | Threaded
Open this post in threaded view
|

Re: error

John Drozd
Hi Steve,

My name is John and I am trying to install 3D Slicer with Matthew that you previously conversed with.

I created the build.log.

Below is it's contents (can you suggest how to fix it; apparently it cannot find the extension loader)

Sourcing /home/marcese/Slicer3compiled/Slicer-3-6/slicer_variables.tcl
Slicer3_HOME is /home/marcese/Slicer3compiled/Slicer-3-6
making with make -j 4
running: svn switch http://svn.slicer.org/Slicer3/branches/Slicer-3-6
At revision 16108.

running: sh ./Scripts/genlib.tcl /home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib -32 --test-type Experimental
Sourcing /home/marcese/Slicer3compiled/Slicer-3-6/slicer_variables.tcl
Slicer3_HOME is /home/marcese/Slicer3compiled/Slicer-3-6
running: svn co http://svn.slicer.org/Slicer3-lib-mirrors/branches/Slicer-3-6/VTK VTK
Checked out revision 162.

running: /home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/CMake-build/bin/cmake {-GUnix Makefiles} -DCMAKE_BUILD_TYPE:STRING=Debug -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_CXX_COMPILER:STRING=/usr/bin/g++ -DCMAKE_CXX_COMPILER_FULLPATH:FILEPATH=/usr/bin/g++ -DBUILD_TESTING:BOOL=OFF -DVTK_USE_CARBON:BOOL=OFF -DVTK_USE_X:BOOL=ON -DVTK_WRAP_TCL:BOOL=ON -DVTK_USE_HYBRID:BOOL=ON -DVTK_USE_PATENTED:BOOL=ON -DVTK_USE_PARALLEL:BOOL=ON -DVTK_DEBUG_LEAKS:BOOL=ON -DTCL_INCLUDE_PATH:PATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/include -DTK_INCLUDE_PATH:PATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/include -DTCL_LIBRARY:FILEPATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/lib/libtcl8.4.so -DTK_LIBRARY:FILEPATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/lib/libtk8.4.so -DTCL_TCLSH:FILEPATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/bin/tclsh8.4 {} ../VTK
CMake Error at CMake/vtkTestGLX.cmake:212 (file):
  file STRINGS file
  "/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Rendering/OPENGL_INCLUDE_DIR-NOTFOUND/GL/glx.h"
  cannot be read.
Call Stack (most recent call first):
  Rendering/CMakeLists.txt:482 (INCLUDE)


-- Could not find extension loader.  Extensions disabled.
CMake Error: The following variables are used in this project, but they are set to NOTFOUND.
Please set them or make sure they are set and tested correctly in the CMake files:
OPENGL_INCLUDE_DIR (ADVANCED)
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/kwsys
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkzlib
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkjpeg
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkpng
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtktiff
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkexpat
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkfreetype
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtklibxml2
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/DICOMParser
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/MaterialLibrary
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtklibproj4
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/mrmpi
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/verdict
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtknetcdf
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkmetaio
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtksqlite
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkexodus2
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkalglib
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/Doxygen
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/EncodeString
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/HashSource
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/VPIC
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/Cosmo
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/ftgl
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/ParseOGLExt
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/mrmpi/mpistubs
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/mrmpi/src
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/internals
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/lib
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/resources
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/internals/tk8.4
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Common
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Filtering
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Imaging
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Graphics
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/GenericFiltering
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/IO
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Rendering
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/VolumeRendering
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Hybrid
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Widgets
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Parallel
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Infovis
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Geovis
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Views
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Charts
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtk
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkbase
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkcommon
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkfiltering
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkgraphics
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkimaging
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkinteraction
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkio
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtktesting
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkparallel
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkgeovis
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkinfovis
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkviews
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkwidgets
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkhybrid
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkvolumerendering
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkrendering
   used as include directory in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/LastConfigureStep
OPENGL_gl_LIBRARY (ADVANCED)
    linked by target "vtkVolumeRendering" in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/VolumeRendering
    linked by target "vtkWidgets" in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Widgets
    linked by target "vtkParallel" in directory /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Parallel

-- Configuring incomplete, errors occurred!

child process exited abnormally
1
    while executing
"error $ret"
    (procedure "runcmd" line 23)
    invoked from within
"runcmd $::CMAKE  -G$GENERATOR  -DCMAKE_BUILD_TYPE:STRING=$::VTK_BUILD_TYPE  -DBUILD_SHARED_LIBS:BOOL=ON  -DCMAKE_SKIP_RPATH:BOOL=ON  -DCMAKE_CXX_COMPI..."
    invoked from within
"if { [BuildThis $::VTK_TEST_FILE "vtk"] == 1 } {
    cd $Slicer3_LIB

    runcmd $::SVN co $::VTK_TAG VTK

    # Andy's temporary hack to get around w..."
    (file "./Scripts/genlib.tcl" line 907)

child process exited abnormally
ERROR: failed to run getbuildtest: sh ./Scripts/genlib.tcl /home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib -32 --test-type Experimental

Thanks,
John

On Thu, Feb 24, 2011 at 2:02 PM, Steve Pieper <[hidden email]> wrote:
Hi -

It looks like a problem checking out vtk - probably the true error
message is higher in the output than what you reported here.  Try
creating an error log, as described here:

> http://www.slicer.org/slicerWiki/index.php/Slicer3:Build_Instructions#Errors_from_getbuildtest

You might try checking out vtk by hand to see if there's an issue
running svn on your system.

Best,
Steve



On 02/24/2011 10:42 AM, Matt A wrote:
> Hello, I'm installing slicer-3-6, and when trying to compile (using
> "./Slicer-3-6/Scripts/getbuildtest.tcl ") I get an error.
>
> This is the error:
>
> -- Configuring incomplete, errors occurred!
>
> child process exited abnormally
> 1
> while executing
> "error $ret"
> (procedure "runcmd" line 23)
> invoked from within
> "runcmd $::CMAKE -G$GENERATOR
> -DCMAKE_BUILD_TYPE:STRING=$::VTK_BUILD_TYPE -DBUILD_SHARED_LIBS:BOOL=ON
> -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_CXX_COMPI..."
> invoked from within
> "if { [BuildThis $::VTK_TEST_FILE "vtk"] == 1 } {
> cd $Slicer3_LIB
>
> runcmd $::SVN co $::VTK_TAG VTK
>
> # Andy's temporary hack to get around w..."
> (file "./Scripts/genlib.tcl" line 907)
>
> child process exited abnormally
> ERROR: failed to run getbuildtest: sh ./Scripts/genlib.tcl /home/
> /Slicer3compiled/Slicer-3-6/../Slicer3-lib -32 --test-type Experimental
>
> I'm not sure what to do, please help
>
> Thanks
>
>
>
> _______________________________________________
> slicer-users mailing list
> [hidden email]
> http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
> To unsubscribe: send email to [hidden email] with unsubscribe as the subject
_______________________________________________
slicer-users mailing list
[hidden email]
http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
To unsubscribe: send email to [hidden email] with unsubscribe as the subject



--
John Drozd
Post-Doctoral Fellow, Robarts Research Institute
The University of Western Ontario
London, ON, Canada


_______________________________________________
slicer-users mailing list
[hidden email]
http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
To unsubscribe: send email to [hidden email] with unsubscribe as the subject
Reply | Threaded
Open this post in threaded view
|

Re: error

pieper
Administrator
Hi John -

Thanks, the buildlog helps - it looks like you don't have the open gl
development packages installed.  What platform / os are you building on?

For ubuntu you need to have the packages listed here:

http://www.slicer.org/slicerWiki/index.php/Slicer3:Build_Instructions#getbuildtest_on_linux

I'm not sure about other linux oses.  If you find which packages are
needed, let me know.

Best,
Steve


On 02/24/2011 02:50 PM, John Drozd wrote:

> Hi Steve,
>
> My name is John and I am trying to install 3D Slicer with Matthew that
> you previously conversed with.
>
> I created the build.log.
>
> Below is it's contents (can you suggest how to fix it; apparently it
> cannot find the extension loader)
>
> Sourcing /home/marcese/Slicer3compiled/Slicer-3-6/slicer_variables.tcl
> Slicer3_HOME is /home/marcese/Slicer3compiled/Slicer-3-6
> making with make -j 4
> running: svn switch http://svn.slicer.org/Slicer3/branches/Slicer-3-6
> At revision 16108.
>
> running: sh ./Scripts/genlib.tcl
> /home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib -32 --test-type
> Experimental
> Sourcing /home/marcese/Slicer3compiled/Slicer-3-6/slicer_variables.tcl
> Slicer3_HOME is /home/marcese/Slicer3compiled/Slicer-3-6
> running: svn co
> http://svn.slicer.org/Slicer3-lib-mirrors/branches/Slicer-3-6/VTK VTK
> Checked out revision 162.
>
> running:
> /home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/CMake-build/bin/cmake
> {-GUnix Makefiles} -DCMAKE_BUILD_TYPE:STRING=Debug
> -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON
> -DCMAKE_CXX_COMPILER:STRING=/usr/bin/g++
> -DCMAKE_CXX_COMPILER_FULLPATH:FILEPATH=/usr/bin/g++
> -DBUILD_TESTING:BOOL=OFF -DVTK_USE_CARBON:BOOL=OFF -DVTK_USE_X:BOOL=ON
> -DVTK_WRAP_TCL:BOOL=ON -DVTK_USE_HYBRID:BOOL=ON
> -DVTK_USE_PATENTED:BOOL=ON -DVTK_USE_PARALLEL:BOOL=ON
> -DVTK_DEBUG_LEAKS:BOOL=ON
> -DTCL_INCLUDE_PATH:PATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/include
> -DTK_INCLUDE_PATH:PATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/include
> -DTCL_LIBRARY:FILEPATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/lib/libtcl8.4.so
> <http://libtcl8.4.so>
> -DTK_LIBRARY:FILEPATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/lib/libtk8.4.so
> <http://libtk8.4.so>
> -DTCL_TCLSH:FILEPATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/bin/tclsh8.4
> {} ../VTK
> CMake Error at CMake/vtkTestGLX.cmake:212 (file):
>    file STRINGS file
> "/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Rendering/OPENGL_INCLUDE_DIR-NOTFOUND/GL/glx.h"
>    cannot be read.
> Call Stack (most recent call first):
>    Rendering/CMakeLists.txt:482 (INCLUDE)
>
>
> -- Could not find extension loader.  Extensions disabled.
> CMake Error: The following variables are used in this project, but they
> are set to NOTFOUND.
> Please set them or make sure they are set and tested correctly in the
> CMake files:
> OPENGL_INCLUDE_DIR (ADVANCED)
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/kwsys
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkzlib
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkjpeg
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkpng
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtktiff
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkexpat
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkfreetype
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtklibxml2
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/DICOMParser
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/MaterialLibrary
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtklibproj4
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/mrmpi
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/verdict
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtknetcdf
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkmetaio
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtksqlite
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkexodus2
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkalglib
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/Doxygen
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/EncodeString
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/HashSource
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/VPIC
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/Cosmo
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/ftgl
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/ParseOGLExt
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/mrmpi/mpistubs
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/mrmpi/src
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/internals
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/lib
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/resources
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/internals/tk8.4
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Common
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Filtering
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Imaging
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Graphics
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/GenericFiltering
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/IO
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Rendering
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/VolumeRendering
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Hybrid
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Widgets
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Parallel
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Infovis
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Geovis
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Views
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Charts
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtk
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkbase
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkcommon
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkfiltering
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkgraphics
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkimaging
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkinteraction
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkio
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtktesting
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkparallel
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkgeovis
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkinfovis
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkviews
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkwidgets
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkhybrid
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkvolumerendering
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkrendering
>     used as include directory in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/LastConfigureStep
> OPENGL_gl_LIBRARY (ADVANCED)
>      linked by target "vtkVolumeRendering" in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/VolumeRendering
>      linked by target "vtkWidgets" in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Widgets
>      linked by target "vtkParallel" in directory
> /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Parallel
>
> -- Configuring incomplete, errors occurred!
>
> child process exited abnormally
> 1
>      while executing
> "error $ret"
>      (procedure "runcmd" line 23)
>      invoked from within
> "runcmd $::CMAKE  -G$GENERATOR
> -DCMAKE_BUILD_TYPE:STRING=$::VTK_BUILD_TYPE
> -DBUILD_SHARED_LIBS:BOOL=ON  -DCMAKE_SKIP_RPATH:BOOL=ON
> -DCMAKE_CXX_COMPI..."
>      invoked from within
> "if { [BuildThis $::VTK_TEST_FILE "vtk"] == 1 } {
>      cd $Slicer3_LIB
>
>      runcmd $::SVN co $::VTK_TAG VTK
>
>      # Andy's temporary hack to get around w..."
>      (file "./Scripts/genlib.tcl" line 907)
>
> child process exited abnormally
> ERROR: failed to run getbuildtest: sh ./Scripts/genlib.tcl
> /home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib -32 --test-type
> Experimental
>
> Thanks,
> John
>
> On Thu, Feb 24, 2011 at 2:02 PM, Steve Pieper <[hidden email]
> <mailto:[hidden email]>> wrote:
>
>     Hi -
>
>     It looks like a problem checking out vtk - probably the true error
>     message is higher in the output than what you reported here.  Try
>     creating an error log, as described here:
>
>      >
>     http://www.slicer.org/slicerWiki/index.php/Slicer3:Build_Instructions#Errors_from_getbuildtest
>
>     You might try checking out vtk by hand to see if there's an issue
>     running svn on your system.
>
>     Best,
>     Steve
>
>
>
>     On 02/24/2011 10:42 AM, Matt A wrote:
>      > Hello, I'm installing slicer-3-6, and when trying to compile (using
>      > "./Slicer-3-6/Scripts/getbuildtest.tcl ") I get an error.
>      >
>      > This is the error:
>      >
>      > -- Configuring incomplete, errors occurred!
>      >
>      > child process exited abnormally
>      > 1
>      > while executing
>      > "error $ret"
>      > (procedure "runcmd" line 23)
>      > invoked from within
>      > "runcmd $::CMAKE -G$GENERATOR
>      > -DCMAKE_BUILD_TYPE:STRING=$::VTK_BUILD_TYPE
>     -DBUILD_SHARED_LIBS:BOOL=ON
>      > -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_CXX_COMPI..."
>      > invoked from within
>      > "if { [BuildThis $::VTK_TEST_FILE "vtk"] == 1 } {
>      > cd $Slicer3_LIB
>      >
>      > runcmd $::SVN co $::VTK_TAG VTK
>      >
>      > # Andy's temporary hack to get around w..."
>      > (file "./Scripts/genlib.tcl" line 907)
>      >
>      > child process exited abnormally
>      > ERROR: failed to run getbuildtest: sh ./Scripts/genlib.tcl /home/
>      > /Slicer3compiled/Slicer-3-6/../Slicer3-lib -32 --test-type
>     Experimental
>      >
>      > I'm not sure what to do, please help
>      >
>      > Thanks
>      >
>      >
>      >
>      > _______________________________________________
>      > slicer-users mailing list
>      > [hidden email] <mailto:[hidden email]>
>      > http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
>      > To unsubscribe: send email to
>     [hidden email]
>     <mailto:[hidden email]> with
>     unsubscribe as the subject
>     _______________________________________________
>     slicer-users mailing list
>     [hidden email] <mailto:[hidden email]>
>     http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
>     To unsubscribe: send email to
>     [hidden email]
>     <mailto:[hidden email]> with
>     unsubscribe as the subject
>
>
>
>
> --
> John Drozd
> Post-Doctoral Fellow, Robarts Research Institute
> The University of Western Ontario
> London, ON, Canada
>
_______________________________________________
slicer-users mailing list
[hidden email]
http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
To unsubscribe: send email to [hidden email] with unsubscribe as the subject
Reply | Threaded
Open this post in threaded view
|

Re: error

John Drozd
Hi Steve,

I am running Fedora 13. I did a "yum install" on the mesa packages and now Slicer is installing fine without reporting errors.

The packages that I installed were:

mesa-demos.i686                          7.8.2-1.fc13                   updates 
mesa-dri-drivers-experimental.i686       7.8.2-1.fc13                   updates 
mesa-libGL-devel.i686                    7.8.2-1.fc13                   updates 
mesa-libGLU-devel.i686                   7.8.2-1.fc13                   updates 
mesa-libGLw.i686                         6.5.1-8.fc12                   fedora  
mesa-libGLw-devel.i686                   6.5.1-8.fc12                   fedora  
mesa-libOSMesa.i686                      7.8.2-1.fc13                   updates 
mesa-libOSMesa-devel.i686                7.8.2-1.fc13                   updates

Thank you,
John

On Thu, Feb 24, 2011 at 2:58 PM, Steve Pieper <[hidden email]> wrote:
Hi John -

Thanks, the buildlog helps - it looks like you don't have the open gl development packages installed.  What platform / os are you building on?

For ubuntu you need to have the packages listed here:

http://www.slicer.org/slicerWiki/index.php/Slicer3:Build_Instructions#getbuildtest_on_linux

I'm not sure about other linux oses.  If you find which packages are needed, let me know.

Best,
Steve



On 02/24/2011 02:50 PM, John Drozd wrote:
Hi Steve,

My name is John and I am trying to install 3D Slicer with Matthew that
you previously conversed with.

I created the build.log.

Below is it's contents (can you suggest how to fix it; apparently it
cannot find the extension loader)

Sourcing /home/marcese/Slicer3compiled/Slicer-3-6/slicer_variables.tcl
Slicer3_HOME is /home/marcese/Slicer3compiled/Slicer-3-6
making with make -j 4
running: svn switch http://svn.slicer.org/Slicer3/branches/Slicer-3-6
At revision 16108.

running: sh ./Scripts/genlib.tcl
/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib -32 --test-type
Experimental
Sourcing /home/marcese/Slicer3compiled/Slicer-3-6/slicer_variables.tcl
Slicer3_HOME is /home/marcese/Slicer3compiled/Slicer-3-6
running: svn co
http://svn.slicer.org/Slicer3-lib-mirrors/branches/Slicer-3-6/VTK VTK
Checked out revision 162.

running:
/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/CMake-build/bin/cmake
{-GUnix Makefiles} -DCMAKE_BUILD_TYPE:STRING=Debug
-DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON
-DCMAKE_CXX_COMPILER:STRING=/usr/bin/g++
-DCMAKE_CXX_COMPILER_FULLPATH:FILEPATH=/usr/bin/g++
-DBUILD_TESTING:BOOL=OFF -DVTK_USE_CARBON:BOOL=OFF -DVTK_USE_X:BOOL=ON
-DVTK_WRAP_TCL:BOOL=ON -DVTK_USE_HYBRID:BOOL=ON
-DVTK_USE_PATENTED:BOOL=ON -DVTK_USE_PARALLEL:BOOL=ON
-DVTK_DEBUG_LEAKS:BOOL=ON
-DTCL_INCLUDE_PATH:PATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/include
-DTK_INCLUDE_PATH:PATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/include
-DTCL_LIBRARY:FILEPATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/lib/libtcl8.4.so
<http://libtcl8.4.so>

-DTK_LIBRARY:FILEPATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/lib/libtk8.4.so
<http://libtk8.4.so>

-DTCL_TCLSH:FILEPATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/bin/tclsh8.4
{} ../VTK
CMake Error at CMake/vtkTestGLX.cmake:212 (file):
  file STRINGS file
"/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Rendering/OPENGL_INCLUDE_DIR-NOTFOUND/GL/glx.h"
  cannot be read.
Call Stack (most recent call first):
  Rendering/CMakeLists.txt:482 (INCLUDE)


-- Could not find extension loader.  Extensions disabled.
CMake Error: The following variables are used in this project, but they
are set to NOTFOUND.
Please set them or make sure they are set and tested correctly in the
CMake files:
OPENGL_INCLUDE_DIR (ADVANCED)
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/kwsys
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkzlib
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkjpeg
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkpng
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtktiff
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkexpat
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkfreetype
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtklibxml2
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/DICOMParser
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/MaterialLibrary
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtklibproj4
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/mrmpi
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/verdict
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtknetcdf
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkmetaio
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtksqlite
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkexodus2
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkalglib
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/Doxygen
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/EncodeString
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/HashSource
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/VPIC
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/Cosmo
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/ftgl
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/ParseOGLExt
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/mrmpi/mpistubs
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/mrmpi/src
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/internals
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/lib
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/resources
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/internals/tk8.4
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Common
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Filtering
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Imaging
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Graphics
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/GenericFiltering
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/IO
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Rendering
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/VolumeRendering
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Hybrid
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Widgets
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Parallel
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Infovis
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Geovis
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Views
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Charts
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtk
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkbase
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkcommon
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkfiltering
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkgraphics
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkimaging
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkinteraction
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkio
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtktesting
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkparallel
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkgeovis
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkinfovis
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkviews
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkwidgets
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkhybrid
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkvolumerendering
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkrendering
   used as include directory in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/LastConfigureStep
OPENGL_gl_LIBRARY (ADVANCED)
    linked by target "vtkVolumeRendering" in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/VolumeRendering
    linked by target "vtkWidgets" in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Widgets
    linked by target "vtkParallel" in directory
/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Parallel

-- Configuring incomplete, errors occurred!

child process exited abnormally
1
    while executing
"error $ret"
    (procedure "runcmd" line 23)
    invoked from within
"runcmd $::CMAKE  -G$GENERATOR
-DCMAKE_BUILD_TYPE:STRING=$::VTK_BUILD_TYPE
-DBUILD_SHARED_LIBS:BOOL=ON  -DCMAKE_SKIP_RPATH:BOOL=ON
-DCMAKE_CXX_COMPI..."
    invoked from within
"if { [BuildThis $::VTK_TEST_FILE "vtk"] == 1 } {
    cd $Slicer3_LIB

    runcmd $::SVN co $::VTK_TAG VTK

    # Andy's temporary hack to get around w..."
    (file "./Scripts/genlib.tcl" line 907)

child process exited abnormally
ERROR: failed to run getbuildtest: sh ./Scripts/genlib.tcl
/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib -32 --test-type
Experimental

Thanks,
John

On Thu, Feb 24, 2011 at 2:02 PM, Steve Pieper <[hidden email]
<mailto:[hidden email]>> wrote:

   Hi -

   It looks like a problem checking out vtk - probably the true error
   message is higher in the output than what you reported here.  Try
   creating an error log, as described here:

    >
   http://www.slicer.org/slicerWiki/index.php/Slicer3:Build_Instructions#Errors_from_getbuildtest

   You might try checking out vtk by hand to see if there's an issue
   running svn on your system.

   Best,
   Steve



   On 02/24/2011 10:42 AM, Matt A wrote:
    > Hello, I'm installing slicer-3-6, and when trying to compile (using
    > "./Slicer-3-6/Scripts/getbuildtest.tcl ") I get an error.
    >
    > This is the error:
    >
    > -- Configuring incomplete, errors occurred!
    >
    > child process exited abnormally
    > 1
    > while executing
    > "error $ret"
    > (procedure "runcmd" line 23)
    > invoked from within
    > "runcmd $::CMAKE -G$GENERATOR
    > -DCMAKE_BUILD_TYPE:STRING=$::VTK_BUILD_TYPE
   -DBUILD_SHARED_LIBS:BOOL=ON
    > -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_CXX_COMPI..."
    > invoked from within
    > "if { [BuildThis $::VTK_TEST_FILE "vtk"] == 1 } {
    > cd $Slicer3_LIB
    >
    > runcmd $::SVN co $::VTK_TAG VTK
    >
    > # Andy's temporary hack to get around w..."
    > (file "./Scripts/genlib.tcl" line 907)
    >
    > child process exited abnormally
    > ERROR: failed to run getbuildtest: sh ./Scripts/genlib.tcl /home/
    > /Slicer3compiled/Slicer-3-6/../Slicer3-lib -32 --test-type
   Experimental
    >
    > I'm not sure what to do, please help
    >
    > Thanks
    >
    >
    >
    > _______________________________________________
    > slicer-users mailing list
    > [hidden email] <mailto:[hidden email]>

    > http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
    > To unsubscribe: send email to
   [hidden email]
   <mailto:[hidden email]> with

   unsubscribe as the subject
   _______________________________________________
   slicer-users mailing list
   [hidden email] <mailto:[hidden email]>    <mailto:[hidden email]> with

   unsubscribe as the subject




--
John Drozd
Post-Doctoral Fellow, Robarts Research Institute
The University of Western Ontario
London, ON, Canada




--
John Drozd
Post-Doctoral Fellow, Robarts Research Institute
The University of Western Ontario
London, ON, Canada


_______________________________________________
slicer-users mailing list
[hidden email]
http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
To unsubscribe: send email to [hidden email] with unsubscribe as the subject
Reply | Threaded
Open this post in threaded view
|

Re: error

pieper
Administrator
Glad it's working now and thanks for the info - I pasted it into the
wiki for future reference.

-Steve

On 02/24/2011 03:08 PM, John Drozd wrote:

> Hi Steve,
>
> I am running Fedora 13. I did a "yum install" on the mesa packages and
> now Slicer is installing fine without reporting errors.
>
> The packages that I installed were:
>
> mesa-demos.i686                          7.8.2-1.fc13
> updates
> mesa-dri-drivers-experimental.i686       7.8.2-1.fc13
> updates
> mesa-libGL-devel.i686                    7.8.2-1.fc13
> updates
> mesa-libGLU-devel.i686                   7.8.2-1.fc13
> updates
> mesa-libGLw.i686                         6.5.1-8.fc12
> fedora
> mesa-libGLw-devel.i686                   6.5.1-8.fc12
> fedora
> mesa-libOSMesa.i686                      7.8.2-1.fc13
> updates
> mesa-libOSMesa-devel.i686                7.8.2-1.fc13
> updates
>
> Thank you,
> John
>
> On Thu, Feb 24, 2011 at 2:58 PM, Steve Pieper <[hidden email]
> <mailto:[hidden email]>> wrote:
>
>     Hi John -
>
>     Thanks, the buildlog helps - it looks like you don't have the open
>     gl development packages installed.  What platform / os are you
>     building on?
>
>     For ubuntu you need to have the packages listed here:
>
>     http://www.slicer.org/slicerWiki/index.php/Slicer3:Build_Instructions#getbuildtest_on_linux
>
>     I'm not sure about other linux oses.  If you find which packages are
>     needed, let me know.
>
>     Best,
>     Steve
>
>
>
>     On 02/24/2011 02:50 PM, John Drozd wrote:
>
>         Hi Steve,
>
>         My name is John and I am trying to install 3D Slicer with
>         Matthew that
>         you previously conversed with.
>
>         I created the build.log.
>
>         Below is it's contents (can you suggest how to fix it; apparently it
>         cannot find the extension loader)
>
>         Sourcing
>         /home/marcese/Slicer3compiled/Slicer-3-6/slicer_variables.tcl
>         Slicer3_HOME is /home/marcese/Slicer3compiled/Slicer-3-6
>         making with make -j 4
>         running: svn switch
>         http://svn.slicer.org/Slicer3/branches/Slicer-3-6
>         At revision 16108.
>
>         running: sh ./Scripts/genlib.tcl
>         /home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib -32
>         --test-type
>         Experimental
>         Sourcing
>         /home/marcese/Slicer3compiled/Slicer-3-6/slicer_variables.tcl
>         Slicer3_HOME is /home/marcese/Slicer3compiled/Slicer-3-6
>         running: svn co
>         http://svn.slicer.org/Slicer3-lib-mirrors/branches/Slicer-3-6/VTK VTK
>         Checked out revision 162.
>
>         running:
>         /home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/CMake-build/bin/cmake
>         {-GUnix Makefiles} -DCMAKE_BUILD_TYPE:STRING=Debug
>         -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON
>         -DCMAKE_CXX_COMPILER:STRING=/usr/bin/g++
>         -DCMAKE_CXX_COMPILER_FULLPATH:FILEPATH=/usr/bin/g++
>         -DBUILD_TESTING:BOOL=OFF -DVTK_USE_CARBON:BOOL=OFF
>         -DVTK_USE_X:BOOL=ON
>         -DVTK_WRAP_TCL:BOOL=ON -DVTK_USE_HYBRID:BOOL=ON
>         -DVTK_USE_PATENTED:BOOL=ON -DVTK_USE_PARALLEL:BOOL=ON
>         -DVTK_DEBUG_LEAKS:BOOL=ON
>         -DTCL_INCLUDE_PATH:PATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/include
>         -DTK_INCLUDE_PATH:PATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/include
>         -DTCL_LIBRARY:FILEPATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/lib/libtcl8.4.so
>         <http://libtcl8.4.so>
>         <http://libtcl8.4.so>
>
>         -DTK_LIBRARY:FILEPATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/lib/libtk8.4.so
>         <http://libtk8.4.so>
>         <http://libtk8.4.so>
>
>         -DTCL_TCLSH:FILEPATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/bin/tclsh8.4
>         {} ../VTK
>         CMake Error at CMake/vtkTestGLX.cmake:212 (file):
>            file STRINGS file
>         "/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Rendering/OPENGL_INCLUDE_DIR-NOTFOUND/GL/glx.h"
>            cannot be read.
>         Call Stack (most recent call first):
>            Rendering/CMakeLists.txt:482 (INCLUDE)
>
>
>         -- Could not find extension loader.  Extensions disabled.
>         CMake Error: The following variables are used in this project,
>         but they
>         are set to NOTFOUND.
>         Please set them or make sure they are set and tested correctly
>         in the
>         CMake files:
>         OPENGL_INCLUDE_DIR (ADVANCED)
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/kwsys
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkzlib
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkjpeg
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkpng
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtktiff
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkexpat
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkfreetype
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtklibxml2
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/DICOMParser
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/MaterialLibrary
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtklibproj4
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/mrmpi
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/verdict
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtknetcdf
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkmetaio
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtksqlite
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkexodus2
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkalglib
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/Doxygen
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/EncodeString
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/HashSource
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/VPIC
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/Cosmo
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/ftgl
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/ParseOGLExt
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/mrmpi/mpistubs
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/mrmpi/src
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/internals
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/lib
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/resources
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/internals/tk8.4
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Common
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Filtering
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Imaging
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Graphics
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/GenericFiltering
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/IO
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Rendering
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/VolumeRendering
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Hybrid
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Widgets
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Parallel
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Infovis
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Geovis
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Views
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Charts
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtk
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkbase
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkcommon
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkfiltering
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkgraphics
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkimaging
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkinteraction
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkio
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtktesting
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkparallel
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkgeovis
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkinfovis
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkviews
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkwidgets
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkhybrid
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkvolumerendering
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkrendering
>             used as include directory in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/LastConfigureStep
>         OPENGL_gl_LIBRARY (ADVANCED)
>              linked by target "vtkVolumeRendering" in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/VolumeRendering
>              linked by target "vtkWidgets" in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Widgets
>              linked by target "vtkParallel" in directory
>         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Parallel
>
>         -- Configuring incomplete, errors occurred!
>
>         child process exited abnormally
>         1
>              while executing
>         "error $ret"
>              (procedure "runcmd" line 23)
>              invoked from within
>         "runcmd $::CMAKE  -G$GENERATOR
>         -DCMAKE_BUILD_TYPE:STRING=$::VTK_BUILD_TYPE
>         -DBUILD_SHARED_LIBS:BOOL=ON  -DCMAKE_SKIP_RPATH:BOOL=ON
>         -DCMAKE_CXX_COMPI..."
>              invoked from within
>         "if { [BuildThis $::VTK_TEST_FILE "vtk"] == 1 } {
>              cd $Slicer3_LIB
>
>              runcmd $::SVN co $::VTK_TAG VTK
>
>              # Andy's temporary hack to get around w..."
>              (file "./Scripts/genlib.tcl" line 907)
>
>         child process exited abnormally
>         ERROR: failed to run getbuildtest: sh ./Scripts/genlib.tcl
>         /home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib -32
>         --test-type
>         Experimental
>
>         Thanks,
>         John
>
>         On Thu, Feb 24, 2011 at 2:02 PM, Steve Pieper
>         <[hidden email] <mailto:[hidden email]>
>         <mailto:[hidden email] <mailto:[hidden email]>>>
>         wrote:
>
>             Hi -
>
>             It looks like a problem checking out vtk - probably the true
>         error
>             message is higher in the output than what you reported here.
>           Try
>             creating an error log, as described here:
>
>          >
>         http://www.slicer.org/slicerWiki/index.php/Slicer3:Build_Instructions#Errors_from_getbuildtest
>
>             You might try checking out vtk by hand to see if there's an
>         issue
>             running svn on your system.
>
>             Best,
>             Steve
>
>
>
>             On 02/24/2011 10:42 AM, Matt A wrote:
>          > Hello, I'm installing slicer-3-6, and when trying to compile
>         (using
>          > "./Slicer-3-6/Scripts/getbuildtest.tcl ") I get an error.
>          >
>          > This is the error:
>          >
>          > -- Configuring incomplete, errors occurred!
>          >
>          > child process exited abnormally
>          > 1
>          > while executing
>          > "error $ret"
>          > (procedure "runcmd" line 23)
>          > invoked from within
>          > "runcmd $::CMAKE -G$GENERATOR
>          > -DCMAKE_BUILD_TYPE:STRING=$::VTK_BUILD_TYPE
>             -DBUILD_SHARED_LIBS:BOOL=ON
>          > -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_CXX_COMPI..."
>          > invoked from within
>          > "if { [BuildThis $::VTK_TEST_FILE "vtk"] == 1 } {
>          > cd $Slicer3_LIB
>          >
>          > runcmd $::SVN co $::VTK_TAG VTK
>          >
>          > # Andy's temporary hack to get around w..."
>          > (file "./Scripts/genlib.tcl" line 907)
>          >
>          > child process exited abnormally
>          > ERROR: failed to run getbuildtest: sh ./Scripts/genlib.tcl /home/
>          > /Slicer3compiled/Slicer-3-6/../Slicer3-lib -32 --test-type
>             Experimental
>          >
>          > I'm not sure what to do, please help
>          >
>          > Thanks
>          >
>          >
>          >
>          > _______________________________________________
>          > slicer-users mailing list
>          > [hidden email]
>         <mailto:[hidden email]>
>         <mailto:[hidden email]
>         <mailto:[hidden email]>>
>
>          > http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
>          > To unsubscribe: send email to
>         [hidden email]
>         <mailto:[hidden email]>
>         <mailto:[hidden email]
>         <mailto:[hidden email]>> with
>
>             unsubscribe as the subject
>             _______________________________________________
>             slicer-users mailing list
>         [hidden email]
>         <mailto:[hidden email]>
>         <mailto:[hidden email]
>         <mailto:[hidden email]>>
>
>         http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
>             To unsubscribe: send email to
>         [hidden email]
>         <mailto:[hidden email]>
>         <mailto:[hidden email]
>         <mailto:[hidden email]>> with
>
>             unsubscribe as the subject
>
>
>
>
>         --
>         John Drozd
>         Post-Doctoral Fellow, Robarts Research Institute
>         The University of Western Ontario
>         London, ON, Canada
>
>
>
>
> --
> John Drozd
> Post-Doctoral Fellow, Robarts Research Institute
> The University of Western Ontario
> London, ON, Canada
>
_______________________________________________
slicer-users mailing list
[hidden email]
http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
To unsubscribe: send email to [hidden email] with unsubscribe as the subject
Reply | Threaded
Open this post in threaded view
|

Re: error

John Drozd
Hi Steve,

Actually near the end, I am getting a new error:

The bottom snippet is: (attached is the build.log file)
...
[100%] Built target KWConvertImageToHeader

running: cvs -d :pserver:anoncvs:@www.vtk.org:/cvsroot/Insight login
Logging in to :pserver:anoncvs@...:2401/cvsroot/Insight
cvs [login aborted]: connect to [www.vtk.org]:2401 failed: Connection refused

child process exited abnormally
1
    while executing
"error $ret"
    (procedure "runcmd" line 23)
    invoked from within
"runcmd $::CVS -d :pserver:anoncvs:@www.vtk.org:/cvsroot/Insight login"
    invoked from within
"if { [BuildThis $::ITK_TEST_FILE "itk"] == 1 } {
    cd $Slicer3_LIB

    runcmd $::CVS -d :pserver:anoncvs:@www.vtk.org:/cvsroot/Insight login
    ev..."
    (file "./Scripts/genlib.tcl" line 1129)

child process exited abnormally
ERROR: failed to run getbuildtest: sh ./Scripts/genlib.tcl /home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib -32 --test-type Experimental


Thanks,
John






On Thu, Feb 24, 2011 at 3:19 PM, Steve Pieper <[hidden email]> wrote:
Glad it's working now and thanks for the info - I pasted it into the wiki for future reference.

-Steve


On 02/24/2011 03:08 PM, John Drozd wrote:
Hi Steve,

I am running Fedora 13. I did a "yum install" on the mesa packages and
now Slicer is installing fine without reporting errors.

The packages that I installed were:

mesa-demos.i686                          7.8.2-1.fc13
updates
mesa-dri-drivers-experimental.i686       7.8.2-1.fc13
updates
mesa-libGL-devel.i686                    7.8.2-1.fc13
updates
mesa-libGLU-devel.i686                   7.8.2-1.fc13
updates
mesa-libGLw.i686                         6.5.1-8.fc12
fedora
mesa-libGLw-devel.i686                   6.5.1-8.fc12
fedora
mesa-libOSMesa.i686                      7.8.2-1.fc13
updates
mesa-libOSMesa-devel.i686                7.8.2-1.fc13
updates

Thank you,
John

On Thu, Feb 24, 2011 at 2:58 PM, Steve Pieper <[hidden email]
<mailto:[hidden email]>> wrote:

   Hi John -

   Thanks, the buildlog helps - it looks like you don't have the open
   gl development packages installed.  What platform / os are you
   building on?

   For ubuntu you need to have the packages listed here:

   http://www.slicer.org/slicerWiki/index.php/Slicer3:Build_Instructions#getbuildtest_on_linux

   I'm not sure about other linux oses.  If you find which packages are
   needed, let me know.

   Best,
   Steve



   On 02/24/2011 02:50 PM, John Drozd wrote:

       Hi Steve,

       My name is John and I am trying to install 3D Slicer with
       Matthew that
       you previously conversed with.

       I created the build.log.

       Below is it's contents (can you suggest how to fix it; apparently it
       cannot find the extension loader)

       Sourcing
       /home/marcese/Slicer3compiled/Slicer-3-6/slicer_variables.tcl
       Slicer3_HOME is /home/marcese/Slicer3compiled/Slicer-3-6
       making with make -j 4
       running: svn switch
       http://svn.slicer.org/Slicer3/branches/Slicer-3-6
       At revision 16108.

       running: sh ./Scripts/genlib.tcl
       /home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib -32
       --test-type
       Experimental
       Sourcing
       /home/marcese/Slicer3compiled/Slicer-3-6/slicer_variables.tcl
       Slicer3_HOME is /home/marcese/Slicer3compiled/Slicer-3-6
       running: svn co
       http://svn.slicer.org/Slicer3-lib-mirrors/branches/Slicer-3-6/VTK VTK
       Checked out revision 162.

       running:
       /home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/CMake-build/bin/cmake
       {-GUnix Makefiles} -DCMAKE_BUILD_TYPE:STRING=Debug
       -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON
       -DCMAKE_CXX_COMPILER:STRING=/usr/bin/g++
       -DCMAKE_CXX_COMPILER_FULLPATH:FILEPATH=/usr/bin/g++
       -DBUILD_TESTING:BOOL=OFF -DVTK_USE_CARBON:BOOL=OFF
       -DVTK_USE_X:BOOL=ON
       -DVTK_WRAP_TCL:BOOL=ON -DVTK_USE_HYBRID:BOOL=ON
       -DVTK_USE_PATENTED:BOOL=ON -DVTK_USE_PARALLEL:BOOL=ON
       -DVTK_DEBUG_LEAKS:BOOL=ON
       -DTCL_INCLUDE_PATH:PATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/include
       -DTK_INCLUDE_PATH:PATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/include
       -DTCL_LIBRARY:FILEPATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/lib/libtcl8.4.so
       <http://libtcl8.4.so>
       <http://libtcl8.4.so>

       -DTK_LIBRARY:FILEPATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/lib/libtk8.4.so
       <http://libtk8.4.so>
       <http://libtk8.4.so>

       -DTCL_TCLSH:FILEPATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/bin/tclsh8.4
       {} ../VTK
       CMake Error at CMake/vtkTestGLX.cmake:212 (file):
          file STRINGS file
       "/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Rendering/OPENGL_INCLUDE_DIR-NOTFOUND/GL/glx.h"
          cannot be read.
       Call Stack (most recent call first):
          Rendering/CMakeLists.txt:482 (INCLUDE)


       -- Could not find extension loader.  Extensions disabled.
       CMake Error: The following variables are used in this project,
       but they
       are set to NOTFOUND.
       Please set them or make sure they are set and tested correctly
       in the
       CMake files:
       OPENGL_INCLUDE_DIR (ADVANCED)
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/kwsys
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkzlib
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkjpeg
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkpng
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtktiff
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkexpat
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkfreetype
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtklibxml2
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/DICOMParser
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/MaterialLibrary
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtklibproj4
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/mrmpi
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/verdict
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtknetcdf
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkmetaio
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtksqlite
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkexodus2
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkalglib
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/Doxygen
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/EncodeString
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/HashSource
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/VPIC
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/Cosmo
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/ftgl
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/ParseOGLExt
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/mrmpi/mpistubs
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/mrmpi/src
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/internals
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/lib
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/resources
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/internals/tk8.4
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Common
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Filtering
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Imaging
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Graphics
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/GenericFiltering
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/IO
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Rendering
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/VolumeRendering
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Hybrid
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Widgets
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Parallel
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Infovis
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Geovis
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Views
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Charts
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtk
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkbase
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkcommon
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkfiltering
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkgraphics
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkimaging
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkinteraction
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkio
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtktesting
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkparallel
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkgeovis
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkinfovis
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkviews
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkwidgets
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkhybrid
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkvolumerendering
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkrendering
           used as include directory in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/LastConfigureStep
       OPENGL_gl_LIBRARY (ADVANCED)
            linked by target "vtkVolumeRendering" in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/VolumeRendering
            linked by target "vtkWidgets" in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Widgets
            linked by target "vtkParallel" in directory
       /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Parallel

       -- Configuring incomplete, errors occurred!

       child process exited abnormally
       1
            while executing
       "error $ret"
            (procedure "runcmd" line 23)
            invoked from within
       "runcmd $::CMAKE  -G$GENERATOR
       -DCMAKE_BUILD_TYPE:STRING=$::VTK_BUILD_TYPE
       -DBUILD_SHARED_LIBS:BOOL=ON  -DCMAKE_SKIP_RPATH:BOOL=ON
       -DCMAKE_CXX_COMPI..."
            invoked from within
       "if { [BuildThis $::VTK_TEST_FILE "vtk"] == 1 } {
            cd $Slicer3_LIB

            runcmd $::SVN co $::VTK_TAG VTK

            # Andy's temporary hack to get around w..."
            (file "./Scripts/genlib.tcl" line 907)

       child process exited abnormally
       ERROR: failed to run getbuildtest: sh ./Scripts/genlib.tcl
       /home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib -32
       --test-type
       Experimental

       Thanks,
       John

       On Thu, Feb 24, 2011 at 2:02 PM, Steve Pieper
       <[hidden email] <mailto:[hidden email]>
       <mailto:[hidden email] <mailto:[hidden email]>>>

       wrote:

           Hi -

           It looks like a problem checking out vtk - probably the true
       error
           message is higher in the output than what you reported here.
         Try
           creating an error log, as described here:

        >
       http://www.slicer.org/slicerWiki/index.php/Slicer3:Build_Instructions#Errors_from_getbuildtest

           You might try checking out vtk by hand to see if there's an
       issue
           running svn on your system.

           Best,
           Steve



           On 02/24/2011 10:42 AM, Matt A wrote:
        > Hello, I'm installing slicer-3-6, and when trying to compile
       (using
        > "./Slicer-3-6/Scripts/getbuildtest.tcl ") I get an error.
        >
        > This is the error:
        >
        > -- Configuring incomplete, errors occurred!
        >
        > child process exited abnormally
        > 1
        > while executing
        > "error $ret"
        > (procedure "runcmd" line 23)
        > invoked from within
        > "runcmd $::CMAKE -G$GENERATOR
        > -DCMAKE_BUILD_TYPE:STRING=$::VTK_BUILD_TYPE
           -DBUILD_SHARED_LIBS:BOOL=ON
        > -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_CXX_COMPI..."
        > invoked from within
        > "if { [BuildThis $::VTK_TEST_FILE "vtk"] == 1 } {
        > cd $Slicer3_LIB
        >
        > runcmd $::SVN co $::VTK_TAG VTK
        >
        > # Andy's temporary hack to get around w..."
        > (file "./Scripts/genlib.tcl" line 907)
        >
        > child process exited abnormally
        > ERROR: failed to run getbuildtest: sh ./Scripts/genlib.tcl /home/
        > /Slicer3compiled/Slicer-3-6/../Slicer3-lib -32 --test-type
           Experimental
        >
        > I'm not sure what to do, please help
        >
        > Thanks
        >
        >
        >
        > _______________________________________________
        > slicer-users mailing list
        > [hidden email]
       <mailto:[hidden email]>
       <mailto:[hidden email]
       <mailto:[hidden email]>>

        > http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
        > To unsubscribe: send email to
       [hidden email]
       <mailto:[hidden email]>
       <mailto:[hidden email]
       <mailto:[hidden email]>> with

           unsubscribe as the subject
           _______________________________________________
           slicer-users mailing list
       [hidden email]
       <mailto:[hidden email]>
       <mailto:[hidden email]
       <mailto:[hidden email]>>

       http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
           To unsubscribe: send email to
       [hidden email]
       <mailto:[hidden email]>
       <mailto:[hidden email]
       <mailto:[hidden email]>> with

           unsubscribe as the subject




       --
       John Drozd
       Post-Doctoral Fellow, Robarts Research Institute
       The University of Western Ontario
       London, ON, Canada




--
John Drozd
Post-Doctoral Fellow, Robarts Research Institute
The University of Western Ontario
London, ON, Canada




--
John Drozd
Post-Doctoral Fellow, Robarts Research Institute
The University of Western Ontario
London, ON, Canada


_______________________________________________
slicer-users mailing list
[hidden email]
http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
To unsubscribe: send email to [hidden email] with unsubscribe as the subject

build.log (3M) Download Attachment
Reply | Threaded
Open this post in threaded view
|

Re: error

pieper
Administrator
Hmm, this looks like a networking issue (perhaps a firewall?).

Try running the cvs command by hand to see if it works.  This is what i
get, but it looks like you cannot connect to the port.

> $ cvs -d :pserver:anoncvs:@www.vtk.org:/cvsroot/Insight login
> Logging in to :pserver:[hidden email]:2401/cvsroot/Insight

-Steve



On 02/24/2011 03:39 PM, John Drozd wrote:

> Hi Steve,
>
> Actually near the end, I am getting a new error:
>
> The bottom snippet is: (attached is the build.log file)
> ...
> [100%] Built target KWConvertImageToHeader
>
> running: cvs -d :pserver:anoncvs:@www.vtk.org:/cvsroot/Insight login
> Logging in to :pserver:[hidden email]:2401/cvsroot/Insight
> <http://pserver:anoncvs@...:2401/cvsroot/Insight>
> cvs [login aborted]: connect to [www.vtk.org <http://www.vtk.org>]:2401
> failed: Connection refused
>
> child process exited abnormally
> 1
>      while executing
> "error $ret"
>      (procedure "runcmd" line 23)
>      invoked from within
> "runcmd $::CVS -d :pserver:anoncvs:@www.vtk.org:/cvsroot/Insight login"
>      invoked from within
> "if { [BuildThis $::ITK_TEST_FILE "itk"] == 1 } {
>      cd $Slicer3_LIB
>
>      runcmd $::CVS -d :pserver:anoncvs:@www.vtk.org:/cvsroot/Insight login
>      ev..."
>      (file "./Scripts/genlib.tcl" line 1129)
>
> child process exited abnormally
> ERROR: failed to run getbuildtest: sh ./Scripts/genlib.tcl
> /home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib -32 --test-type
> Experimental
>
>
> Thanks,
> John
>
>
>
>
>
>
> On Thu, Feb 24, 2011 at 3:19 PM, Steve Pieper <[hidden email]
> <mailto:[hidden email]>> wrote:
>
>     Glad it's working now and thanks for the info - I pasted it into the
>     wiki for future reference.
>
>     -Steve
>
>
>     On 02/24/2011 03:08 PM, John Drozd wrote:
>
>         Hi Steve,
>
>         I am running Fedora 13. I did a "yum install" on the mesa
>         packages and
>         now Slicer is installing fine without reporting errors.
>
>         The packages that I installed were:
>
>         mesa-demos.i686                          7.8.2-1.fc13
>         updates
>         mesa-dri-drivers-experimental.i686       7.8.2-1.fc13
>         updates
>         mesa-libGL-devel.i686                    7.8.2-1.fc13
>         updates
>         mesa-libGLU-devel.i686                   7.8.2-1.fc13
>         updates
>         mesa-libGLw.i686                         6.5.1-8.fc12
>         fedora
>         mesa-libGLw-devel.i686                   6.5.1-8.fc12
>         fedora
>         mesa-libOSMesa.i686                      7.8.2-1.fc13
>         updates
>         mesa-libOSMesa-devel.i686                7.8.2-1.fc13
>         updates
>
>         Thank you,
>         John
>
>         On Thu, Feb 24, 2011 at 2:58 PM, Steve Pieper
>         <[hidden email] <mailto:[hidden email]>
>         <mailto:[hidden email] <mailto:[hidden email]>>>
>         wrote:
>
>             Hi John -
>
>             Thanks, the buildlog helps - it looks like you don't have
>         the open
>             gl development packages installed.  What platform / os are you
>             building on?
>
>             For ubuntu you need to have the packages listed here:
>
>         http://www.slicer.org/slicerWiki/index.php/Slicer3:Build_Instructions#getbuildtest_on_linux
>
>             I'm not sure about other linux oses.  If you find which
>         packages are
>             needed, let me know.
>
>             Best,
>             Steve
>
>
>
>             On 02/24/2011 02:50 PM, John Drozd wrote:
>
>                 Hi Steve,
>
>                 My name is John and I am trying to install 3D Slicer with
>                 Matthew that
>                 you previously conversed with.
>
>                 I created the build.log.
>
>                 Below is it's contents (can you suggest how to fix it;
>         apparently it
>                 cannot find the extension loader)
>
>                 Sourcing
>
>           /home/marcese/Slicer3compiled/Slicer-3-6/slicer_variables.tcl
>                 Slicer3_HOME is /home/marcese/Slicer3compiled/Slicer-3-6
>                 making with make -j 4
>                 running: svn switch
>         http://svn.slicer.org/Slicer3/branches/Slicer-3-6
>                 At revision 16108.
>
>                 running: sh ./Scripts/genlib.tcl
>                 /home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib -32
>                 --test-type
>                 Experimental
>                 Sourcing
>
>           /home/marcese/Slicer3compiled/Slicer-3-6/slicer_variables.tcl
>                 Slicer3_HOME is /home/marcese/Slicer3compiled/Slicer-3-6
>                 running: svn co
>         http://svn.slicer.org/Slicer3-lib-mirrors/branches/Slicer-3-6/VTK VTK
>                 Checked out revision 162.
>
>                 running:
>
>           /home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/CMake-build/bin/cmake
>                 {-GUnix Makefiles} -DCMAKE_BUILD_TYPE:STRING=Debug
>                 -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON
>                 -DCMAKE_CXX_COMPILER:STRING=/usr/bin/g++
>                 -DCMAKE_CXX_COMPILER_FULLPATH:FILEPATH=/usr/bin/g++
>                 -DBUILD_TESTING:BOOL=OFF -DVTK_USE_CARBON:BOOL=OFF
>                 -DVTK_USE_X:BOOL=ON
>                 -DVTK_WRAP_TCL:BOOL=ON -DVTK_USE_HYBRID:BOOL=ON
>                 -DVTK_USE_PATENTED:BOOL=ON -DVTK_USE_PARALLEL:BOOL=ON
>                 -DVTK_DEBUG_LEAKS:BOOL=ON
>
>           -DTCL_INCLUDE_PATH:PATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/include
>
>           -DTK_INCLUDE_PATH:PATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/include
>
>           -DTCL_LIBRARY:FILEPATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/lib/libtcl8.4.so <http://libtcl8.4.so>
>         <http://libtcl8.4.so>
>         <http://libtcl8.4.so>
>
>
>           -DTK_LIBRARY:FILEPATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/lib/libtk8.4.so <http://libtk8.4.so>
>         <http://libtk8.4.so>
>         <http://libtk8.4.so>
>
>
>           -DTCL_TCLSH:FILEPATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/bin/tclsh8.4
>                 {} ../VTK
>                 CMake Error at CMake/vtkTestGLX.cmake:212 (file):
>                    file STRINGS file
>         "/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Rendering/OPENGL_INCLUDE_DIR-NOTFOUND/GL/glx.h"
>                    cannot be read.
>                 Call Stack (most recent call first):
>                    Rendering/CMakeLists.txt:482 (INCLUDE)
>
>
>                 -- Could not find extension loader.  Extensions disabled.
>                 CMake Error: The following variables are used in this
>         project,
>                 but they
>                 are set to NOTFOUND.
>                 Please set them or make sure they are set and tested
>         correctly
>                 in the
>                 CMake files:
>                 OPENGL_INCLUDE_DIR (ADVANCED)
>                     used as include directory in directory
>                 /home/marcese/Slicer3compiled/Slicer3-lib/VTK
>                     used as include directory in directory
>                 /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping
>                     used as include directory in directory
>                 /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/kwsys
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkzlib
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkjpeg
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkpng
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtktiff
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkexpat
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkfreetype
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtklibxml2
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/DICOMParser
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/MaterialLibrary
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtklibproj4
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/mrmpi
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/verdict
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtknetcdf
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkmetaio
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtksqlite
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkexodus2
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkalglib
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/Doxygen
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/EncodeString
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/HashSource
>                     used as include directory in directory
>                 /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/VPIC
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/Cosmo
>                     used as include directory in directory
>                 /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/ftgl
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/ParseOGLExt
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/mrmpi/mpistubs
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/mrmpi/src
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/internals
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/lib
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/resources
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/internals/tk8.4
>                     used as include directory in directory
>                 /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Common
>                     used as include directory in directory
>                 /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Filtering
>                     used as include directory in directory
>                 /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Imaging
>                     used as include directory in directory
>                 /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Graphics
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/GenericFiltering
>                     used as include directory in directory
>                 /home/marcese/Slicer3compiled/Slicer3-lib/VTK/IO
>                     used as include directory in directory
>                 /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Rendering
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/VolumeRendering
>                     used as include directory in directory
>                 /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Hybrid
>                     used as include directory in directory
>                 /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Widgets
>                     used as include directory in directory
>                 /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Parallel
>                     used as include directory in directory
>                 /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Infovis
>                     used as include directory in directory
>                 /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Geovis
>                     used as include directory in directory
>                 /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Views
>                     used as include directory in directory
>                 /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Charts
>                     used as include directory in directory
>                 /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtk
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkbase
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkcommon
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkfiltering
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkgraphics
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkimaging
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkinteraction
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkio
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtktesting
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkparallel
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkgeovis
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkinfovis
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkviews
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkwidgets
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkhybrid
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkvolumerendering
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkrendering
>                     used as include directory in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/LastConfigureStep
>                 OPENGL_gl_LIBRARY (ADVANCED)
>                      linked by target "vtkVolumeRendering" in directory
>
>           /home/marcese/Slicer3compiled/Slicer3-lib/VTK/VolumeRendering
>                      linked by target "vtkWidgets" in directory
>                 /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Widgets
>                      linked by target "vtkParallel" in directory
>                 /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Parallel
>
>                 -- Configuring incomplete, errors occurred!
>
>                 child process exited abnormally
>                 1
>                      while executing
>         "error $ret"
>                      (procedure "runcmd" line 23)
>                      invoked from within
>         "runcmd $::CMAKE  -G$GENERATOR
>                 -DCMAKE_BUILD_TYPE:STRING=$::VTK_BUILD_TYPE
>                 -DBUILD_SHARED_LIBS:BOOL=ON  -DCMAKE_SKIP_RPATH:BOOL=ON
>                 -DCMAKE_CXX_COMPI..."
>                      invoked from within
>         "if { [BuildThis $::VTK_TEST_FILE "vtk"] == 1 } {
>                      cd $Slicer3_LIB
>
>                      runcmd $::SVN co $::VTK_TAG VTK
>
>                      # Andy's temporary hack to get around w..."
>                      (file "./Scripts/genlib.tcl" line 907)
>
>                 child process exited abnormally
>                 ERROR: failed to run getbuildtest: sh ./Scripts/genlib.tcl
>                 /home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib -32
>                 --test-type
>                 Experimental
>
>                 Thanks,
>                 John
>
>                 On Thu, Feb 24, 2011 at 2:02 PM, Steve Pieper
>         <[hidden email] <mailto:[hidden email]>
>         <mailto:[hidden email] <mailto:[hidden email]>>
>         <mailto:[hidden email] <mailto:[hidden email]>
>         <mailto:[hidden email] <mailto:[hidden email]>>>>
>
>                 wrote:
>
>                     Hi -
>
>                     It looks like a problem checking out vtk - probably
>         the true
>                 error
>                     message is higher in the output than what you
>         reported here.
>                   Try
>                     creating an error log, as described here:
>
>          >
>         http://www.slicer.org/slicerWiki/index.php/Slicer3:Build_Instructions#Errors_from_getbuildtest
>
>                     You might try checking out vtk by hand to see if
>         there's an
>                 issue
>                     running svn on your system.
>
>                     Best,
>                     Steve
>
>
>
>                     On 02/24/2011 10:42 AM, Matt A wrote:
>          > Hello, I'm installing slicer-3-6, and when trying to compile
>                 (using
>          > "./Slicer-3-6/Scripts/getbuildtest.tcl ") I get an error.
>          >
>          > This is the error:
>          >
>          > -- Configuring incomplete, errors occurred!
>          >
>          > child process exited abnormally
>          > 1
>          > while executing
>          > "error $ret"
>          > (procedure "runcmd" line 23)
>          > invoked from within
>          > "runcmd $::CMAKE -G$GENERATOR
>          > -DCMAKE_BUILD_TYPE:STRING=$::VTK_BUILD_TYPE
>                     -DBUILD_SHARED_LIBS:BOOL=ON
>          > -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_CXX_COMPI..."
>          > invoked from within
>          > "if { [BuildThis $::VTK_TEST_FILE "vtk"] == 1 } {
>          > cd $Slicer3_LIB
>          >
>          > runcmd $::SVN co $::VTK_TAG VTK
>          >
>          > # Andy's temporary hack to get around w..."
>          > (file "./Scripts/genlib.tcl" line 907)
>          >
>          > child process exited abnormally
>          > ERROR: failed to run getbuildtest: sh ./Scripts/genlib.tcl /home/
>          > /Slicer3compiled/Slicer-3-6/../Slicer3-lib -32 --test-type
>                     Experimental
>          >
>          > I'm not sure what to do, please help
>          >
>          > Thanks
>          >
>          >
>          >
>          > _______________________________________________
>          > slicer-users mailing list
>          > [hidden email]
>         <mailto:[hidden email]>
>         <mailto:[hidden email]
>         <mailto:[hidden email]>>
>         <mailto:[hidden email]
>         <mailto:[hidden email]>
>         <mailto:[hidden email]
>         <mailto:[hidden email]>>>
>
>          > http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
>          > To unsubscribe: send email to
>         [hidden email]
>         <mailto:[hidden email]>
>         <mailto:[hidden email]
>         <mailto:[hidden email]>>
>         <mailto:[hidden email]
>         <mailto:[hidden email]>
>         <mailto:[hidden email]
>         <mailto:[hidden email]>>> with
>
>                     unsubscribe as the subject
>                     _______________________________________________
>                     slicer-users mailing list
>         [hidden email] <mailto:[hidden email]>
>         <mailto:[hidden email]
>         <mailto:[hidden email]>>
>         <mailto:[hidden email]
>         <mailto:[hidden email]>
>         <mailto:[hidden email]
>         <mailto:[hidden email]>>>
>
>         http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
>                     To unsubscribe: send email to
>         [hidden email]
>         <mailto:[hidden email]>
>         <mailto:[hidden email]
>         <mailto:[hidden email]>>
>         <mailto:[hidden email]
>         <mailto:[hidden email]>
>         <mailto:[hidden email]
>         <mailto:[hidden email]>>> with
>
>                     unsubscribe as the subject
>
>
>
>
>                 --
>                 John Drozd
>                 Post-Doctoral Fellow, Robarts Research Institute
>                 The University of Western Ontario
>                 London, ON, Canada
>
>
>
>
>         --
>         John Drozd
>         Post-Doctoral Fellow, Robarts Research Institute
>         The University of Western Ontario
>         London, ON, Canada
>
>
>
>
> --
> John Drozd
> Post-Doctoral Fellow, Robarts Research Institute
> The University of Western Ontario
> London, ON, Canada
>
_______________________________________________
slicer-users mailing list
[hidden email]
http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
To unsubscribe: send email to [hidden email] with unsubscribe as the subject
Reply | Threaded
Open this post in threaded view
|

Re: error

John Drozd
Hi Steve,

I tried "cvs -d :pserver:anoncvs:@www.vtk.org:/cvsroot/Insight login" and also got:
Logging in to :pserver:anoncvs@...:2401/cvsroot/Insight

So, I tried running the getbuildtest.tcl script a second time and a second time was a charm :-)
It connected this time and the script is now installing Insight.

Thank you,
John

On Thu, Feb 24, 2011 at 4:10 PM, Steve Pieper <[hidden email]> wrote:
Hmm, this looks like a networking issue (perhaps a firewall?).

Try running the cvs command by hand to see if it works.  This is what i get, but it looks like you cannot connect to the port.


$ cvs -d :pserver:anoncvs:@www.vtk.org:/cvsroot/Insight login
Logging in to :pserver:anoncvs@...:2401/cvsroot/Insight

-Steve




On 02/24/2011 03:39 PM, John Drozd wrote:
Hi Steve,

Actually near the end, I am getting a new error:

The bottom snippet is: (attached is the build.log file)
...
[100%] Built target KWConvertImageToHeader

running: cvs -d :pserver:anoncvs:@www.vtk.org:/cvsroot/Insight login
Logging in to :pserver:anoncvs@...:2401/cvsroot/Insight
<http://pserver:anoncvs@...:2401/cvsroot/Insight>
cvs [login aborted]: connect to [www.vtk.org <http://www.vtk.org>]:2401

failed: Connection refused

child process exited abnormally
1
    while executing
"error $ret"
    (procedure "runcmd" line 23)
    invoked from within
"runcmd $::CVS -d :pserver:anoncvs:@www.vtk.org:/cvsroot/Insight login"
    invoked from within
"if { [BuildThis $::ITK_TEST_FILE "itk"] == 1 } {
    cd $Slicer3_LIB

    runcmd $::CVS -d :pserver:anoncvs:@www.vtk.org:/cvsroot/Insight login
    ev..."
    (file "./Scripts/genlib.tcl" line 1129)

child process exited abnormally
ERROR: failed to run getbuildtest: sh ./Scripts/genlib.tcl
/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib -32 --test-type
Experimental


Thanks,
John






On Thu, Feb 24, 2011 at 3:19 PM, Steve Pieper <[hidden email]
<mailto:[hidden email]>> wrote:

   Glad it's working now and thanks for the info - I pasted it into the
   wiki for future reference.

   -Steve


   On 02/24/2011 03:08 PM, John Drozd wrote:

       Hi Steve,

       I am running Fedora 13. I did a "yum install" on the mesa
       packages and
       now Slicer is installing fine without reporting errors.

       The packages that I installed were:

       mesa-demos.i686                          7.8.2-1.fc13
       updates
       mesa-dri-drivers-experimental.i686       7.8.2-1.fc13
       updates
       mesa-libGL-devel.i686                    7.8.2-1.fc13
       updates
       mesa-libGLU-devel.i686                   7.8.2-1.fc13
       updates
       mesa-libGLw.i686                         6.5.1-8.fc12
       fedora
       mesa-libGLw-devel.i686                   6.5.1-8.fc12
       fedora
       mesa-libOSMesa.i686                      7.8.2-1.fc13
       updates
       mesa-libOSMesa-devel.i686                7.8.2-1.fc13
       updates

       Thank you,
       John

       On Thu, Feb 24, 2011 at 2:58 PM, Steve Pieper
       <[hidden email] <mailto:[hidden email]>
       <mailto:[hidden email] <mailto:[hidden email]>>>
       wrote:

           Hi John -

           Thanks, the buildlog helps - it looks like you don't have
       the open
           gl development packages installed.  What platform / os are you
           building on?

           For ubuntu you need to have the packages listed here:

       http://www.slicer.org/slicerWiki/index.php/Slicer3:Build_Instructions#getbuildtest_on_linux

           I'm not sure about other linux oses.  If you find which
       packages are
           needed, let me know.

           Best,
           Steve



           On 02/24/2011 02:50 PM, John Drozd wrote:

               Hi Steve,

               My name is John and I am trying to install 3D Slicer with
               Matthew that
               you previously conversed with.

               I created the build.log.

               Below is it's contents (can you suggest how to fix it;
       apparently it
               cannot find the extension loader)

               Sourcing

         /home/marcese/Slicer3compiled/Slicer-3-6/slicer_variables.tcl
               Slicer3_HOME is /home/marcese/Slicer3compiled/Slicer-3-6
               making with make -j 4
               running: svn switch
       http://svn.slicer.org/Slicer3/branches/Slicer-3-6
               At revision 16108.

               running: sh ./Scripts/genlib.tcl
               /home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib -32
               --test-type
               Experimental
               Sourcing

         /home/marcese/Slicer3compiled/Slicer-3-6/slicer_variables.tcl
               Slicer3_HOME is /home/marcese/Slicer3compiled/Slicer-3-6
               running: svn co
       http://svn.slicer.org/Slicer3-lib-mirrors/branches/Slicer-3-6/VTK VTK
               Checked out revision 162.

               running:

         /home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/CMake-build/bin/cmake
               {-GUnix Makefiles} -DCMAKE_BUILD_TYPE:STRING=Debug
               -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON
               -DCMAKE_CXX_COMPILER:STRING=/usr/bin/g++
               -DCMAKE_CXX_COMPILER_FULLPATH:FILEPATH=/usr/bin/g++
               -DBUILD_TESTING:BOOL=OFF -DVTK_USE_CARBON:BOOL=OFF
               -DVTK_USE_X:BOOL=ON
               -DVTK_WRAP_TCL:BOOL=ON -DVTK_USE_HYBRID:BOOL=ON
               -DVTK_USE_PATENTED:BOOL=ON -DVTK_USE_PARALLEL:BOOL=ON
               -DVTK_DEBUG_LEAKS:BOOL=ON

         -DTCL_INCLUDE_PATH:PATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/include

         -DTK_INCLUDE_PATH:PATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/include

         -DTCL_LIBRARY:FILEPATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/lib/libtcl8.4.so <http://libtcl8.4.so>
       <http://libtcl8.4.so>
       <http://libtcl8.4.so>


         -DTK_LIBRARY:FILEPATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/lib/libtk8.4.so <http://libtk8.4.so>
       <http://libtk8.4.so>
       <http://libtk8.4.so>


         -DTCL_TCLSH:FILEPATH=/home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib/tcl-build/bin/tclsh8.4
               {} ../VTK
               CMake Error at CMake/vtkTestGLX.cmake:212 (file):
                  file STRINGS file
       "/home/marcese/Slicer3compiled/Slicer3-lib/VTK/Rendering/OPENGL_INCLUDE_DIR-NOTFOUND/GL/glx.h"
                  cannot be read.
               Call Stack (most recent call first):
                  Rendering/CMakeLists.txt:482 (INCLUDE)


               -- Could not find extension loader.  Extensions disabled.
               CMake Error: The following variables are used in this
       project,
               but they
               are set to NOTFOUND.
               Please set them or make sure they are set and tested
       correctly
               in the
               CMake files:
               OPENGL_INCLUDE_DIR (ADVANCED)
                   used as include directory in directory
               /home/marcese/Slicer3compiled/Slicer3-lib/VTK
                   used as include directory in directory
               /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping
                   used as include directory in directory
               /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/kwsys
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkzlib
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkjpeg
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkpng
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtktiff
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkexpat
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkfreetype
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtklibxml2
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/DICOMParser
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/MaterialLibrary
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtklibproj4
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/mrmpi
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/verdict
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtknetcdf
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkmetaio
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtksqlite
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkexodus2
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/vtkalglib
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/Doxygen
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/EncodeString
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/HashSource
                   used as include directory in directory
               /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/VPIC
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/Cosmo
                   used as include directory in directory
               /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/ftgl
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/ParseOGLExt
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/mrmpi/mpistubs
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/mrmpi/src
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/internals
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/lib
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/resources
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/TclTk/internals/tk8.4
                   used as include directory in directory
               /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Common
                   used as include directory in directory
               /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Filtering
                   used as include directory in directory
               /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Imaging
                   used as include directory in directory
               /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Graphics
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/GenericFiltering
                   used as include directory in directory
               /home/marcese/Slicer3compiled/Slicer3-lib/VTK/IO
                   used as include directory in directory
               /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Rendering
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/VolumeRendering
                   used as include directory in directory
               /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Hybrid
                   used as include directory in directory
               /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Widgets
                   used as include directory in directory
               /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Parallel
                   used as include directory in directory
               /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Infovis
                   used as include directory in directory
               /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Geovis
                   used as include directory in directory
               /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Views
                   used as include directory in directory
               /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Charts
                   used as include directory in directory
               /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtk
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkbase
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkcommon
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkfiltering
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkgraphics
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkimaging
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkinteraction
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkio
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtktesting
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkparallel
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkgeovis
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkinfovis
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkviews
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkwidgets
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkhybrid
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkvolumerendering
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Wrapping/Tcl/vtkrendering
                   used as include directory in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Utilities/LastConfigureStep
               OPENGL_gl_LIBRARY (ADVANCED)
                    linked by target "vtkVolumeRendering" in directory

         /home/marcese/Slicer3compiled/Slicer3-lib/VTK/VolumeRendering
                    linked by target "vtkWidgets" in directory
               /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Widgets
                    linked by target "vtkParallel" in directory
               /home/marcese/Slicer3compiled/Slicer3-lib/VTK/Parallel

               -- Configuring incomplete, errors occurred!

               child process exited abnormally
               1
                    while executing
       "error $ret"
                    (procedure "runcmd" line 23)
                    invoked from within
       "runcmd $::CMAKE  -G$GENERATOR
               -DCMAKE_BUILD_TYPE:STRING=$::VTK_BUILD_TYPE
               -DBUILD_SHARED_LIBS:BOOL=ON  -DCMAKE_SKIP_RPATH:BOOL=ON
               -DCMAKE_CXX_COMPI..."
                    invoked from within
       "if { [BuildThis $::VTK_TEST_FILE "vtk"] == 1 } {
                    cd $Slicer3_LIB

                    runcmd $::SVN co $::VTK_TAG VTK

                    # Andy's temporary hack to get around w..."
                    (file "./Scripts/genlib.tcl" line 907)

               child process exited abnormally
               ERROR: failed to run getbuildtest: sh ./Scripts/genlib.tcl
               /home/marcese/Slicer3compiled/Slicer-3-6/../Slicer3-lib -32
               --test-type
               Experimental

               Thanks,
               John

               On Thu, Feb 24, 2011 at 2:02 PM, Steve Pieper
       <[hidden email] <mailto:[hidden email]>
       <mailto:[hidden email] <mailto:[hidden email]>>
       <mailto:[hidden email] <mailto:[hidden email]>
       <mailto:[hidden email] <mailto:[hidden email]>>>>

               wrote:

                   Hi -

                   It looks like a problem checking out vtk - probably
       the true
               error
                   message is higher in the output than what you
       reported here.
                 Try
                   creating an error log, as described here:

        >
       http://www.slicer.org/slicerWiki/index.php/Slicer3:Build_Instructions#Errors_from_getbuildtest

                   You might try checking out vtk by hand to see if
       there's an
               issue
                   running svn on your system.

                   Best,
                   Steve



                   On 02/24/2011 10:42 AM, Matt A wrote:
        > Hello, I'm installing slicer-3-6, and when trying to compile
               (using
        > "./Slicer-3-6/Scripts/getbuildtest.tcl ") I get an error.
        >
        > This is the error:
        >
        > -- Configuring incomplete, errors occurred!
        >
        > child process exited abnormally
        > 1
        > while executing
        > "error $ret"
        > (procedure "runcmd" line 23)
        > invoked from within
        > "runcmd $::CMAKE -G$GENERATOR
        > -DCMAKE_BUILD_TYPE:STRING=$::VTK_BUILD_TYPE
                   -DBUILD_SHARED_LIBS:BOOL=ON
        > -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_CXX_COMPI..."
        > invoked from within
        > "if { [BuildThis $::VTK_TEST_FILE "vtk"] == 1 } {
        > cd $Slicer3_LIB
        >
        > runcmd $::SVN co $::VTK_TAG VTK
        >
        > # Andy's temporary hack to get around w..."
        > (file "./Scripts/genlib.tcl" line 907)
        >
        > child process exited abnormally
        > ERROR: failed to run getbuildtest: sh ./Scripts/genlib.tcl /home/
        > /Slicer3compiled/Slicer-3-6/../Slicer3-lib -32 --test-type
                   Experimental
        >
        > I'm not sure what to do, please help
        >
        > Thanks
        >
        >
        >
        > _______________________________________________
        > slicer-users mailing list
        > [hidden email]
       <mailto:[hidden email]>
       <mailto:[hidden email]
       <mailto:[hidden email]>>
       <mailto:[hidden email]
       <mailto:[hidden email]>
       <mailto:[hidden email]
       <mailto:[hidden email]>>>

        > http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
        > To unsubscribe: send email to
       [hidden email]
       <mailto:[hidden email]>
       <mailto:[hidden email]
       <mailto:[hidden email]>>
       <mailto:[hidden email]
       <mailto:[hidden email]>
       <mailto:[hidden email]
       <mailto:[hidden email]>>> with

                   unsubscribe as the subject
                   _______________________________________________
                   slicer-users mailing list
       [hidden email] <mailto:[hidden email]>
       <mailto:[hidden email]
       <mailto:[hidden email]>>
       <mailto:[hidden email]
       <mailto:[hidden email]>
       <mailto:[hidden email]
       <mailto:[hidden email]>>>

       http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
                   To unsubscribe: send email to
       [hidden email]
       <mailto:[hidden email]>
       <mailto:[hidden email]
       <mailto:[hidden email]>>
       <mailto:[hidden email]
       <mailto:[hidden email]>
       <mailto:[hidden email]
       <mailto:[hidden email]>>> with

                   unsubscribe as the subject




               --
               John Drozd
               Post-Doctoral Fellow, Robarts Research Institute
               The University of Western Ontario
               London, ON, Canada




       --
       John Drozd
       Post-Doctoral Fellow, Robarts Research Institute
       The University of Western Ontario
       London, ON, Canada




--
John Drozd
Post-Doctoral Fellow, Robarts Research Institute
The University of Western Ontario
London, ON, Canada




--
John Drozd
Post-Doctoral Fellow, Robarts Research Institute
The University of Western Ontario
London, ON, Canada


_______________________________________________
slicer-users mailing list
[hidden email]
http://massmail.spl.harvard.edu/mailman/listinfo/slicer-users
To unsubscribe: send email to [hidden email] with unsubscribe as the subject